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SAMN16294719
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
49,986
Reads
1,073
Observed features
6.221
Shannon
0.891
Evenness
1,073
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.39
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805521
Per-run QC
- 16S identity
- 97.4%
- Q30
- 52.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_5956 · Nocardioides 443 (0.9%)
- ASV_7067 · Corallococcus 157 (0.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Actinomycetota 28.9%
- Pseudomonadota 18.4%
- Cyanobacteriota 13.3%
- Chloroflexota 8.1%
- Gemmatimonadota 7.6%
- Bacteroidota 6.4%
- Acidobacteriota 5.6%
- everything else 11.6%
- Actinobacteria 18.2%
- Alphaproteobacteria 13.7%
- Cyanobacteriia 13.3%
- Thermoleophilia 7.2%
- Bacteroidia 6.4%
- Gemmatimonadia 6.1%
- Chloroflexia 5.0%
- everything else 30.1%
- Cyanobacteriales 11.7%
- Propionibacteriales 6.2%
- Gemmatimonadales 6.1%
- Sphingomonadales 5.9%
- Solirubrobacterales 5.0%
- Micrococcales 3.9%
- Cytophagales 3.6%
- everything else 57.5%
- Incertae Sedis 10.7%
- Coleofasciculaceae 7.5%
- Nocardioidaceae 6.2%
- Gemmatimonadaceae 6.1%
- Sphingomonadaceae 5.9%
- Paracoccaceae 2.8%
- Intrasporangiaceae 2.8%
- everything else 58.1%
- Incertae Sedis 41.1%
- Nocardioides 6.1%
- Sphingomonas 4.7%
- Gemmatimonas 3.1%
- Rubellimicrobium 2.7%
- Microcoleus SAG 1449-1a 2.5%
- Bryobacter 2.1%
- everything else 37.8%
- uncultured bacterium 67.3%
- uncultured Bacteroidetes bacterium 1.7%
- uncultured soil bacterium 1.4%
- uncultured Blastococcus sp. 1.2%
- Nocardioides sp. 1.2%
- uncultured Acidobacteria bacterium 1.1%
- uncultured actinobacterium 1.0%
- everything else 25.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 85% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 80% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.