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SAMN16294720
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
50,635
Reads
1,334
Observed features
6.524
Shannon
0.907
Evenness
1,334
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.4
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805510
Per-run QC
- 16S identity
- 97.4%
- Q30
- 52.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4845 · Marmoricola 33 (0.1%)
- ASV_5956 · Nocardioides 790 (1.6%)
- ASV_7067 · Corallococcus 296 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Pseudomonadota 29.2%
- Actinomycetota 26.9%
- Acidobacteriota 7.6%
- Cyanobacteriota 7.5%
- Chloroflexota 6.7%
- Myxococcota 5.6%
- Gemmatimonadota 4.1%
- everything else 12.4%
- Actinobacteria 18.2%
- Alphaproteobacteria 16.4%
- Gammaproteobacteria 12.8%
- Cyanobacteriia 7.3%
- Thermoleophilia 5.8%
- Acidobacteriae 3.9%
- Polyangiia 3.9%
- everything else 31.6%
- Burkholderiales 9.0%
- Micrococcales 7.2%
- Hyphomicrobiales 6.7%
- Propionibacteriales 6.4%
- Sphingomonadales 6.1%
- Cyanobacteriales 5.4%
- Gemmatimonadales 3.6%
- everything else 55.6%
- Incertae Sedis 13.6%
- Nocardioidaceae 6.4%
- Intrasporangiaceae 6.1%
- Sphingomonadaceae 6.1%
- Xanthobacteraceae 3.8%
- Nitrosomonadaceae 3.8%
- Gemmatimonadaceae 3.6%
- everything else 56.8%
- Incertae Sedis 36.5%
- Nocardioides 6.1%
- Sphingomonas 4.8%
- Terrabacter 4.3%
- Ellin6067 2.9%
- Gemmatimonas 2.3%
- Bryobacter 1.5%
- everything else 41.7%
- uncultured bacterium 53.8%
- Terrabacter sp. T2-YC6785 3.5%
- uncultured soil bacterium 3.0%
- metagenome 2.5%
- Marmoricola sp. 1.7%
- uncultured Acidobacteria bacterium 1.5%
- Nocardioides sp. MSL 24 1.2%
- everything else 32.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 85% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 81% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 77% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 77% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 73% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.