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SAMN16294738
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
47,249
Reads
974
Observed features
6.129
Shannon
0.891
Evenness
974
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.58
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805509
Per-run QC
- 16S identity
- 94.6%
- Q30
- 52.5%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4845 · Marmoricola 81 (0.2%)
- ASV_7067 · Corallococcus 226 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Pseudomonadota 23.7%
- Acidobacteriota 18.8%
- Actinomycetota 13.2%
- Bacteroidota 7.5%
- Chloroflexota 7.5%
- Gemmatimonadota 6.3%
- Myxococcota 5.8%
- everything else 17.1%
- Acidobacteriae 17.3%
- Alphaproteobacteria 16.3%
- Bacteroidia 7.5%
- Gammaproteobacteria 7.4%
- Actinobacteria 6.4%
- Ktedonobacteria 5.5%
- Thermoleophilia 5.3%
- everything else 34.2%
- Terriglobales 10.8%
- Sphingomonadales 7.7%
- Gemmatimonadales 5.1%
- Ktedonobacterales 5.0%
- Incertae Sedis 5.0%
- Burkholderiales 4.9%
- Sphingobacteriales 4.8%
- everything else 56.8%
- Incertae Sedis 20.0%
- Sphingomonadaceae 7.7%
- Gemmatimonadaceae 5.1%
- Ktedonobacteraceae 4.9%
- Solibacteraceae 4.0%
- Sphingobacteriaceae 3.3%
- Solirubrobacteraceae 2.9%
- everything else 52.0%
- Incertae Sedis 43.8%
- Sphingomonas 6.9%
- Candidatus Solibacter 4.0%
- Mucilaginibacter 3.2%
- Gemmatimonas 2.9%
- Conexibacter 2.4%
- Bryobacter 2.0%
- everything else 34.7%
- uncultured bacterium 65.3%
- uncultured Acidobacteria bacterium 3.5%
- metagenome 2.3%
- uncultured proteobacterium 2.0%
- uncultured Gemmatimonadetes bacterium 1.9%
- Camellia oleifera 1.7%
- uncultured Sphingoterrabacterium sp. 1.6%
- everything else 21.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 80% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 78% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.