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SAMN16294721
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
43,371
Reads
1,557
Observed features
6.832
Shannon
0.93
Evenness
1,557
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.41
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805502
Per-run QC
- 16S identity
- 97.3%
- Q30
- 46.5%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_5956 · Nocardioides 304 (0.7%)
- ASV_7067 · Corallococcus 810 (1.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Actinomycetota 27.9%
- Pseudomonadota 22.7%
- Chloroflexota 11.0%
- Acidobacteriota 7.4%
- Gemmatimonadota 7.3%
- Myxococcota 6.6%
- Planctomycetota 3.8%
- everything else 13.4%
- Alphaproteobacteria 13.8%
- Thermoleophilia 11.6%
- Actinobacteria 10.5%
- Gammaproteobacteria 8.8%
- Gemmatimonadia 5.3%
- Acidimicrobiia 5.0%
- Polyangiia 3.8%
- everything else 41.1%
- Solirubrobacterales 8.0%
- Incertae Sedis 7.5%
- Burkholderiales 6.1%
- Hyphomicrobiales 6.1%
- Gemmatimonadales 5.3%
- Gaiellales 3.5%
- Propionibacteriales 3.1%
- everything else 60.6%
- Incertae Sedis 17.5%
- Gemmatimonadaceae 5.3%
- 67-14 4.9%
- Nitrosomonadaceae 3.4%
- Nocardioidaceae 3.1%
- Sphingomonadaceae 3.1%
- Solirubrobacteraceae 3.0%
- everything else 59.8%
- Incertae Sedis 48.7%
- Nocardioides 2.9%
- Sphingomonas 1.9%
- Corallococcus 1.9%
- MND1 1.7%
- Gaiella 1.6%
- Acidiferrimicrobium 1.5%
- everything else 39.8%
- uncultured bacterium 67.4%
- uncultured Gemmatimonadetes bacterium 1.9%
- Corallococcus exiguus 1.9%
- metagenome 1.9%
- uncultured Chloroflexi bacterium 1.9%
- uncultured soil bacterium 1.7%
- uncultured actinobacterium 0.9%
- everything else 22.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 88% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 86% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 81% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 81% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.