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SAMN16294727
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
51,695
Reads
876
Observed features
5.997
Shannon
0.885
Evenness
876
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.47
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805496
Per-run QC
- 16S identity
- 95.5%
- Q30
- 45.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4845 · Marmoricola 36 (0.1%)
- ASV_5956 · Nocardioides 112 (0.2%)
- ASV_7067 · Corallococcus 32 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.0%
- Archaea 2.0%
- Actinomycetota 34.9%
- Pseudomonadota 19.2%
- Chloroflexota 8.7%
- Acidobacteriota 8.1%
- Gemmatimonadota 7.3%
- Bacteroidota 5.0%
- Armatimonadota 5.0%
- everything else 11.7%
- Actinobacteria 16.6%
- Thermoleophilia 14.8%
- Alphaproteobacteria 13.4%
- Gemmatimonadia 7.2%
- Gammaproteobacteria 5.8%
- Bacteroidia 5.0%
- Acidobacteriae 4.4%
- everything else 32.7%
- Solirubrobacterales 8.8%
- Gemmatimonadales 7.2%
- Hyphomicrobiales 6.3%
- Gaiellales 6.0%
- Burkholderiales 5.4%
- Frankiales 4.9%
- Chitinophagales 4.7%
- everything else 56.5%
- Incertae Sedis 16.1%
- Gemmatimonadaceae 7.2%
- Solirubrobacteraceae 5.1%
- Chitinophagaceae 4.7%
- Fimbriimonadaceae 4.1%
- Beijerinckiaceae 3.9%
- Sphingomonadaceae 3.8%
- everything else 55.0%
- Incertae Sedis 47.1%
- Gemmatimonas 4.0%
- Bryobacter 2.9%
- Actinoplanes 2.8%
- Sphingomonas 2.8%
- Acidiferrimicrobium 2.6%
- Flavisolibacter 2.5%
- everything else 35.4%
- uncultured bacterium 67.5%
- uncultured Armatimonadetes bacterium 2.9%
- uncultured soil bacterium 2.2%
- uncultured archaeon 2.0%
- metagenome 1.8%
- uncultured Methylobacterium sp. 1.4%
- uncultured Chloroflexi bacterium 1.1%
- everything else 21.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 81% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 81% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.