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SAMN16294729
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
41,928
Reads
1,258
Observed features
6.557
Shannon
0.919
Evenness
1,258
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.49
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805519
Per-run QC
- 16S identity
- 97.2%
- Q30
- 45.6%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_5956 · Nocardioides 253 (0.6%)
- ASV_7067 · Corallococcus 223 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.4%
- Archaea 0.6%
- Actinomycetota 34.0%
- Pseudomonadota 20.3%
- Chloroflexota 11.1%
- Gemmatimonadota 9.0%
- Acidobacteriota 7.2%
- Myxococcota 3.5%
- Bacteroidota 3.4%
- everything else 11.4%
- Thermoleophilia 14.8%
- Alphaproteobacteria 14.1%
- Actinobacteria 13.5%
- Gemmatimonadia 7.4%
- Gammaproteobacteria 6.2%
- Acidimicrobiia 5.1%
- Chloroflexia 3.8%
- everything else 35.2%
- Solirubrobacterales 10.0%
- Incertae Sedis 8.0%
- Gemmatimonadales 7.4%
- Hyphomicrobiales 6.7%
- Gaiellales 4.4%
- Burkholderiales 3.8%
- Micrococcales 3.6%
- everything else 56.1%
- Incertae Sedis 18.2%
- Gemmatimonadaceae 7.4%
- 67-14 6.3%
- Solirubrobacteraceae 3.7%
- Micrococcaceae 3.1%
- Sphingomonadaceae 3.1%
- Gaiellaceae 2.9%
- everything else 55.4%
- Incertae Sedis 53.1%
- Gaiella 2.9%
- Pseudarthrobacter 2.8%
- Solirubrobacter 2.3%
- Nocardioides 2.1%
- Sphingomonas 2.0%
- Acidiferrimicrobium 1.7%
- everything else 33.1%
- uncultured bacterium 67.1%
- Pseudarthrobacter polychromogenes 2.8%
- uncultured Gemmatimonadetes bacterium 1.9%
- uncultured Chloroflexi bacterium 1.8%
- metagenome 1.3%
- uncultured soil bacterium 1.2%
- uncultured Rhodospirillaceae bacterium 1.2%
- everything else 22.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 88% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 82% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 80% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 79% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.