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SAMN16294728
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
46,650
Reads
1,380
Observed features
6.685
Shannon
0.925
Evenness
1,380
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.48
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805520
Per-run QC
- 16S identity
- 97.1%
- Q30
- 54.7%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_5956 · Nocardioides 257 (0.6%)
- ASV_7067 · Corallococcus 164 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.1%
- Archaea 0.9%
- Actinomycetota 30.4%
- Pseudomonadota 19.0%
- Gemmatimonadota 11.3%
- Chloroflexota 9.7%
- Acidobacteriota 7.1%
- Bacteroidota 3.9%
- Planctomycetota 3.6%
- everything else 14.9%
- Thermoleophilia 12.8%
- Alphaproteobacteria 11.9%
- Actinobacteria 10.2%
- Gemmatimonadia 9.5%
- Gammaproteobacteria 7.1%
- Acidimicrobiia 6.5%
- Bacteroidia 3.9%
- everything else 38.1%
- Gemmatimonadales 9.5%
- Solirubrobacterales 9.2%
- Incertae Sedis 8.0%
- Hyphomicrobiales 5.2%
- Burkholderiales 4.6%
- Acidimicrobiales 4.3%
- Gaiellales 3.3%
- everything else 56.0%
- Incertae Sedis 19.1%
- Gemmatimonadaceae 9.5%
- 67-14 5.6%
- Acidimicrobiaceae 4.3%
- Solirubrobacteraceae 3.7%
- Sphingomonadaceae 3.2%
- Nocardioidaceae 2.8%
- everything else 52.0%
- Incertae Sedis 56.7%
- Acidiferrimicrobium 2.8%
- Gaiella 2.4%
- Sphingomonas 2.2%
- Nocardioides 2.2%
- Solirubrobacter 2.2%
- Bryobacter 1.4%
- everything else 30.1%
- uncultured bacterium 70.8%
- uncultured Gemmatimonadetes bacterium 2.4%
- uncultured soil bacterium 1.6%
- metagenome 1.5%
- uncultured Acidobacteria bacterium 1.4%
- uncultured Chloroflexi bacterium 1.4%
- uncultured Rhodospirillaceae bacterium 0.9%
- everything else 20.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 88% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 86% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 86% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 80% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.