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SAMN16294725
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
54,928
Reads
719
Observed features
5.371
Shannon
0.816
Evenness
719
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.45
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805498
Per-run QC
- 16S identity
- 98.1%
- Q30
- 52.6%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4845 · Marmoricola 4,073 (7.4%)
- ASV_5956 · Nocardioides 1,142 (2.1%)
- ASV_7067 · Corallococcus 132 (0.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Actinomycetota 49.8%
- Pseudomonadota 12.4%
- Chloroflexota 9.8%
- Acidobacteriota 7.1%
- Bacillota 3.5%
- Gemmatimonadota 3.2%
- Thermodesulfobacteriota 2.5%
- everything else 11.7%
- Actinobacteria 40.6%
- Alphaproteobacteria 6.4%
- Gammaproteobacteria 6.0%
- Thermoleophilia 5.5%
- Acidobacteriae 4.3%
- Anaerolineae 4.0%
- Acidimicrobiia 3.6%
- everything else 29.5%
- Propionibacteriales 17.5%
- Micrococcales 13.5%
- Frankiales 4.9%
- Kineosporiales 3.5%
- Anaerolineales 3.4%
- Burkholderiales 3.3%
- Acidimicrobiales 3.1%
- everything else 50.8%
- Nocardioidaceae 16.5%
- Incertae Sedis 13.8%
- Intrasporangiaceae 10.7%
- Kineosporiaceae 3.5%
- Anaerolineaceae 3.4%
- Acidimicrobiaceae 3.1%
- Gemmatimonadaceae 2.5%
- everything else 46.6%
- Incertae Sedis 26.8%
- Nocardioides 8.3%
- Marmoricola 8.2%
- Pedococcus-Phycicoccus 3.9%
- Terrabacter 3.7%
- Angustibacter 3.5%
- Anaerolinea 3.0%
- everything else 42.4%
- uncultured bacterium 53.7%
- Phycicoccus sp. GT-36 3.9%
- Angustibacter aerolatus 3.5%
- Marmoricola sp. 3.0%
- Terrabacter sp. T2-YC6785 2.8%
- uncultured Nakamurellaceae bacterium 1.6%
- uncultured soil bacterium 1.4%
- everything else 30.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 63% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 57% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 55% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 51% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.