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SAMN16294726
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
50,008
Reads
701
Observed features
5.35
Shannon
0.816
Evenness
701
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.46
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805497
Per-run QC
- 16S identity
- 98.0%
- Q30
- 52.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4845 · Marmoricola 3,557 (7.1%)
- ASV_5956 · Nocardioides 1,255 (2.5%)
- ASV_7067 · Corallococcus 104 (0.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Actinomycetota 51.1%
- Pseudomonadota 13.6%
- Chloroflexota 9.2%
- Acidobacteriota 5.9%
- Bacillota 3.8%
- Gemmatimonadota 3.3%
- Thermodesulfobacteriota 2.6%
- everything else 10.6%
- Actinobacteria 43.2%
- Gammaproteobacteria 6.9%
- Alphaproteobacteria 6.7%
- Thermoleophilia 4.8%
- Acidobacteriae 3.6%
- Anaerolineae 3.3%
- Acidimicrobiia 3.1%
- everything else 28.4%
- Propionibacteriales 18.1%
- Micrococcales 14.3%
- Frankiales 5.0%
- Kineosporiales 4.1%
- Burkholderiales 3.3%
- Lysobacterales 3.2%
- Anaerolineales 2.7%
- everything else 49.3%
- Nocardioidaceae 16.9%
- Incertae Sedis 12.2%
- Intrasporangiaceae 10.8%
- Kineosporiaceae 4.1%
- Rhodanobacteraceae 2.8%
- Anaerolineaceae 2.7%
- Gemmatimonadaceae 2.7%
- everything else 48.0%
- Incertae Sedis 24.0%
- Nocardioides 9.2%
- Marmoricola 7.6%
- Angustibacter 4.0%
- Terrabacter 4.0%
- Pedococcus-Phycicoccus 3.9%
- Gemmatimonas 2.5%
- everything else 44.7%
- uncultured bacterium 50.8%
- Angustibacter aerolatus 4.0%
- Phycicoccus sp. GT-36 3.9%
- Terrabacter sp. T2-YC6785 3.3%
- Marmoricola sp. 3.3%
- uncultured Nakamurellaceae bacterium 1.8%
- uncultured actinobacterium 1.5%
- everything else 31.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 64% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 56% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 55% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.