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SAMN16294737
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
44,715
Reads
1,024
Observed features
6.249
Shannon
0.901
Evenness
1,024
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.57
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805511
Per-run QC
- 16S identity
- 97.0%
- Q30
- 54.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4845 · Marmoricola 41 (0.1%)
- ASV_7067 · Corallococcus 65 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 24.0%
- Acidobacteriota 22.0%
- Actinomycetota 17.2%
- Chloroflexota 15.8%
- Candidatus Eremiobacterota 4.0%
- Bacteroidota 3.3%
- Gemmatimonadota 3.0%
- everything else 10.7%
- Acidobacteriae 21.3%
- Alphaproteobacteria 14.9%
- Gammaproteobacteria 9.1%
- Ktedonobacteria 8.1%
- Actinobacteria 7.7%
- AD3 6.5%
- Thermoleophilia 6.3%
- everything else 26.0%
- Incertae Sedis 13.2%
- Terriglobales 9.8%
- Ktedonobacterales 7.9%
- Hyphomicrobiales 6.6%
- Subgroup 2 6.5%
- Frankiales 4.6%
- Lysobacterales 3.9%
- everything else 47.5%
- Incertae Sedis 37.4%
- Ktedonobacteraceae 7.3%
- Xanthobacteraceae 5.3%
- Acidothermaceae 3.8%
- Gemmatimonadaceae 2.9%
- Solibacteraceae 2.8%
- Acidimicrobiaceae 2.6%
- everything else 37.8%
- Incertae Sedis 56.5%
- Acidothermus 3.8%
- Candidatus Solibacter 2.8%
- Sphingomonas 2.3%
- Bryobacter 2.1%
- Acidiferrimicrobium 2.0%
- Conexibacter 1.9%
- everything else 28.6%
- uncultured bacterium 64.6%
- uncultured Acidobacteria bacterium 5.0%
- uncultured soil bacterium 3.1%
- uncultured forest soil bacterium 2.7%
- uncultured Acidobacteriaceae bacterium 1.6%
- uncultured bacterium DA016 1.1%
- Bradyrhizobium sp. 175LB2PYPT 1.1%
- everything else 20.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 88% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 87% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 87% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 87% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.