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SAMN16294735
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
58,751
Reads
1,083
Observed features
6.253
Shannon
0.895
Evenness
1,083
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.55
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805513
Per-run QC
- 16S identity
- 96.9%
- Q30
- 49.4%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Acidobacteriota 35.3%
- Pseudomonadota 24.4%
- Actinomycetota 9.5%
- Myxococcota 5.7%
- Chloroflexota 5.5%
- Verrucomicrobiota 4.4%
- Bacteroidota 3.3%
- everything else 11.9%
- Acidobacteriae 34.3%
- Alphaproteobacteria 13.7%
- Gammaproteobacteria 10.7%
- Polyangiia 5.2%
- Verrucomicrobiia 4.3%
- Actinobacteria 4.3%
- Thermoleophilia 3.3%
- everything else 24.1%
- Terriglobales 20.2%
- Burkholderiales 5.8%
- Solibacterales 5.7%
- Subgroup 2 5.6%
- Hyphomicrobiales 5.0%
- Incertae Sedis 4.3%
- Pedosphaerales 3.2%
- everything else 50.3%
- Incertae Sedis 32.6%
- Solibacteraceae 5.7%
- Acidobacteriaceae (Subgroup 1) 4.1%
- Xanthobacteraceae 4.0%
- Pedosphaeraceae 3.2%
- Sphingomonadaceae 3.1%
- Gemmatimonadaceae 3.1%
- everything else 44.2%
- Incertae Sedis 52.1%
- Candidatus Solibacter 5.7%
- Sphingomonas 3.0%
- Bryobacter 2.7%
- Acidibacter 2.2%
- Acidothermus 2.0%
- Occallatibacter 1.9%
- everything else 30.4%
- uncultured bacterium 60.1%
- uncultured Acidobacteria bacterium 9.5%
- metagenome 2.7%
- uncultured proteobacterium 2.1%
- uncultured forest soil bacterium 1.4%
- uncultured Acidobacteriaceae bacterium 1.4%
- bacterium enrichment culture clone SBIa4 1.3%
- everything else 21.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 87% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 82% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 80% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.