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SAMN16294736
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
46,070
Reads
1,017
Observed features
6.198
Shannon
0.895
Evenness
1,017
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.56
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805512
Per-run QC
- 16S identity
- 97.0%
- Q30
- 53.8%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_4845 · Marmoricola 61 (0.1%)
- ASV_7067 · Corallococcus 61 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Acidobacteriota 31.8%
- Pseudomonadota 24.9%
- Chloroflexota 11.7%
- Actinomycetota 9.8%
- Bacteroidota 4.6%
- Candidatus Eremiobacterota 3.8%
- Gemmatimonadota 2.3%
- everything else 11.0%
- Acidobacteriae 30.9%
- Alphaproteobacteria 13.8%
- Gammaproteobacteria 11.2%
- Ktedonobacteria 6.7%
- Bacteroidia 4.6%
- AD3 4.2%
- Actinobacteria 4.1%
- everything else 24.5%
- Terriglobales 14.8%
- Incertae Sedis 10.2%
- Subgroup 2 9.1%
- Ktedonobacterales 6.6%
- Hyphomicrobiales 5.1%
- Lysobacterales 4.3%
- Solibacterales 3.9%
- everything else 46.1%
- Incertae Sedis 38.2%
- Ktedonobacteraceae 6.2%
- Xanthobacteraceae 4.1%
- Solibacteraceae 3.9%
- Acidobacteriaceae (Subgroup 1) 3.5%
- Lysobacteraceae 3.1%
- Sphingomonadaceae 2.9%
- everything else 38.1%
- Incertae Sedis 56.9%
- Candidatus Solibacter 3.9%
- Bryobacter 2.9%
- Sphingomonas 2.5%
- Acidothermus 1.7%
- Mucilaginibacter 1.7%
- Occallatibacter 1.4%
- everything else 29.0%
- uncultured bacterium 63.5%
- uncultured Acidobacteria bacterium 7.0%
- uncultured forest soil bacterium 2.6%
- uncultured Acidobacteriaceae bacterium 2.2%
- uncultured soil bacterium 2.1%
- Pedobacter glacialis 1.3%
- bacterium enrichment culture clone SBIa4 1.0%
- everything else 20.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 92% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 86% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 84% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.