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SAMN16294730
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
48,495
Reads
812
Observed features
5.643
Shannon
0.842
Evenness
812
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.5
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805518
Per-run QC
- 16S identity
- 96.8%
- Q30
- 52.6%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 3,614 (7.5%)
- ASV_8178 · Candidatus Solibacter 1,968 (4.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Acidobacteriota 41.1%
- Actinomycetota 21.9%
- Pseudomonadota 14.4%
- Chloroflexota 8.0%
- Planctomycetota 2.6%
- Candidatus Eremiobacterota 2.3%
- RCP2-54 2.1%
- everything else 7.7%
- Acidobacteriae 40.7%
- Alphaproteobacteria 11.2%
- Actinobacteria 9.0%
- Thermoleophilia 6.4%
- Acidimicrobiia 6.4%
- Ktedonobacteria 5.5%
- Gammaproteobacteria 3.2%
- everything else 17.5%
- Subgroup 2 17.0%
- Terriglobales 9.5%
- Solibacterales 9.0%
- Frankiales 8.3%
- Incertae Sedis 7.3%
- Acidimicrobiales 6.4%
- Hyphomicrobiales 5.9%
- everything else 36.6%
- Incertae Sedis 38.6%
- Solibacteraceae 9.0%
- Acidothermaceae 8.2%
- Acidimicrobiaceae 6.4%
- Xanthobacteraceae 4.8%
- Ktedonobacteraceae 4.7%
- Bryobacteraceae 4.3%
- everything else 24.1%
- Incertae Sedis 57.8%
- Candidatus Solibacter 9.0%
- Acidothermus 8.2%
- Bryobacter 4.3%
- Acidiferrimicrobium 3.0%
- 1921-2 2.4%
- Conexibacter 2.0%
- everything else 13.4%
- uncultured bacterium 64.8%
- uncultured Acidobacteriaceae bacterium 7.6%
- uncultured forest soil bacterium 6.6%
- uncultured Acidobacteria bacterium 4.2%
- uncultured bacterium DA016 1.8%
- uncultured soil bacterium 1.7%
- Bradyrhizobium sp. 175LB2PYPT 1.0%
- everything else 12.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 94% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 87% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.