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SAMN16294733
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
44,928
Reads
944
Observed features
6.023
Shannon
0.879
Evenness
944
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.53
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805515
Per-run QC
- 16S identity
- 95.6%
- Q30
- 45.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.0%
- Archaea 1.0%
- Acidobacteriota 28.3%
- Actinomycetota 22.5%
- Chloroflexota 18.4%
- Pseudomonadota 14.0%
- Candidatus Eremiobacterota 2.0%
- Verrucomicrobiota 2.0%
- Bacteroidota 1.7%
- everything else 11.1%
- Acidobacteriae 28.0%
- Actinobacteria 12.1%
- Ktedonobacteria 11.4%
- Alphaproteobacteria 9.5%
- AD3 5.7%
- Acidimicrobiia 5.1%
- Thermoleophilia 5.0%
- everything else 23.1%
- Subgroup 2 14.5%
- Incertae Sedis 11.8%
- Ktedonobacterales 11.0%
- Frankiales 7.1%
- Terriglobales 6.5%
- Acidimicrobiales 5.0%
- Solibacterales 3.7%
- everything else 40.5%
- Incertae Sedis 39.3%
- Ktedonobacteraceae 10.5%
- Acidothermaceae 6.4%
- Acidimicrobiaceae 5.0%
- Solibacteraceae 3.7%
- Xanthobacteraceae 2.8%
- Acidobacteriaceae (Subgroup 1) 2.8%
- everything else 29.6%
- Incertae Sedis 54.2%
- Acidothermus 6.4%
- Candidatus Solibacter 3.7%
- Acidiferrimicrobium 2.9%
- FCPS473 2.5%
- HSB OF53-F07 2.5%
- Acidibacter 2.3%
- everything else 25.6%
- uncultured bacterium 65.4%
- uncultured forest soil bacterium 4.2%
- uncultured Acidobacteria bacterium 3.9%
- uncultured Ktedonobacter sp. 2.4%
- uncultured Acidobacteriaceae bacterium 1.8%
- Bradyrhizobium sp. 175LB2PYPT 1.6%
- uncultured bacterium DA016 1.3%
- everything else 19.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 86% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 84% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.