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SAMN16294731
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
47,499
Reads
730
Observed features
5.582
Shannon
0.847
Evenness
730
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.51
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805517
Per-run QC
- 16S identity
- 96.8%
- Q30
- 54.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 3,542 (7.5%)
- ASV_8178 · Candidatus Solibacter 1,608 (3.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.3%
- Acidobacteriota 35.8%
- Actinomycetota 28.7%
- Pseudomonadota 15.6%
- Chloroflexota 8.2%
- Planctomycetota 2.1%
- Candidatus Eremiobacterota 2.1%
- RCP2-54 1.5%
- everything else 6.0%
- Acidobacteriae 35.4%
- Actinobacteria 13.6%
- Alphaproteobacteria 12.6%
- Thermoleophilia 8.3%
- Acidimicrobiia 6.8%
- Ktedonobacteria 5.3%
- Gammaproteobacteria 3.0%
- everything else 14.8%
- Subgroup 2 15.0%
- Frankiales 12.4%
- Terriglobales 8.7%
- Solibacterales 7.6%
- Hyphomicrobiales 7.2%
- Acidimicrobiales 6.8%
- Incertae Sedis 6.6%
- everything else 35.7%
- Incertae Sedis 34.9%
- Acidothermaceae 12.2%
- Solibacteraceae 7.6%
- Acidimicrobiaceae 6.8%
- Xanthobacteraceae 5.9%
- Solirubrobacteraceae 5.5%
- Ktedonobacteraceae 4.5%
- everything else 22.6%
- Incertae Sedis 54.1%
- Acidothermus 12.2%
- Candidatus Solibacter 7.6%
- Bryobacter 3.5%
- Acidiferrimicrobium 3.1%
- Conexibacter 2.9%
- 1921-2 2.4%
- everything else 14.3%
- uncultured bacterium 65.3%
- uncultured Acidobacteriaceae bacterium 7.6%
- uncultured forest soil bacterium 6.7%
- uncultured Acidobacteria bacterium 3.2%
- uncultured bacterium DA016 2.3%
- Bradyrhizobium sp. 175LB2PYPT 1.4%
- uncultured soil bacterium 1.4%
- everything else 12.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 91% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 85% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 84% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 80% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.