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SAMN16294732
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
48,074
Reads
783
Observed features
5.561
Shannon
0.835
Evenness
783
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.52
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805516
Per-run QC
- 16S identity
- 96.4%
- Q30
- 54.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 3,945 (8.2%)
- ASV_8178 · Candidatus Solibacter 2,828 (5.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Acidobacteriota 42.9%
- Actinomycetota 20.4%
- Pseudomonadota 13.3%
- Chloroflexota 9.6%
- Candidatus Eremiobacterota 2.5%
- RCP2-54 2.1%
- Planctomycetota 2.1%
- everything else 7.0%
- Acidobacteriae 42.5%
- Alphaproteobacteria 10.5%
- Actinobacteria 7.7%
- Acidimicrobiia 7.0%
- Ktedonobacteria 6.6%
- Thermoleophilia 5.7%
- Gammaproteobacteria 2.8%
- everything else 17.1%
- Subgroup 2 17.8%
- Solibacterales 11.0%
- Terriglobales 9.3%
- Incertae Sedis 7.9%
- Acidimicrobiales 7.0%
- Frankiales 6.6%
- Ktedonobacterales 6.6%
- everything else 33.9%
- Incertae Sedis 39.8%
- Solibacteraceae 11.0%
- Acidimicrobiaceae 7.0%
- Acidothermaceae 6.6%
- Ktedonobacteraceae 6.0%
- Xanthobacteraceae 3.9%
- Bryobacteraceae 3.6%
- everything else 22.1%
- Incertae Sedis 58.7%
- Candidatus Solibacter 11.0%
- Acidothermus 6.6%
- Bryobacter 3.6%
- 1921-2 3.1%
- Acidiferrimicrobium 2.7%
- Conexibacter 1.7%
- everything else 12.7%
- uncultured bacterium 66.7%
- uncultured Acidobacteriaceae bacterium 8.4%
- uncultured forest soil bacterium 5.5%
- uncultured Acidobacteria bacterium 3.7%
- uncultured soil bacterium 1.6%
- uncultured bacterium DA016 1.4%
- uncultured Chloroflexi bacterium 1.0%
- everything else 11.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 91% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 87% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 83% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.