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SAMN16294734
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
53,294
Reads
895
Observed features
5.767
Shannon
0.848
Evenness
895
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.54
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805514
Per-run QC
- 16S identity
- 83.6%
- Q30
- 52.7%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_5956 · Nocardioides 79 (0.1%)
- ASV_7067 · Corallococcus 28 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.6%
- Archaea 1.4%
- Acidobacteriota 40.4%
- Chloroflexota 20.3%
- Pseudomonadota 13.6%
- Actinomycetota 9.0%
- Verrucomicrobiota 2.8%
- Bacteroidota 2.4%
- Candidatus Eremiobacterota 2.2%
- everything else 9.4%
- Acidobacteriae 40.1%
- Ktedonobacteria 15.6%
- Alphaproteobacteria 7.8%
- Gammaproteobacteria 5.8%
- Actinobacteria 3.8%
- AD3 3.4%
- Thermoleophilia 3.0%
- everything else 20.5%
- Subgroup 2 21.4%
- Ktedonobacterales 15.3%
- Terriglobales 10.3%
- Incertae Sedis 9.0%
- Solibacterales 3.5%
- Subgroup 13 2.9%
- Gammaproteobacteria Incertae Sedis 2.5%
- everything else 35.0%
- Incertae Sedis 43.6%
- Ktedonobacteraceae 14.9%
- Acidobacteriaceae (Subgroup 1) 5.5%
- Solibacteraceae 3.5%
- Unknown Family 2.5%
- Pedosphaeraceae 2.1%
- Acidimicrobiaceae 2.0%
- everything else 25.8%
- Incertae Sedis 59.5%
- Candidatus Solibacter 3.5%
- FCPS473 3.4%
- Occallatibacter 3.1%
- HSB OF53-F07 2.9%
- Acidibacter 2.4%
- 1921-2 2.1%
- everything else 23.1%
- uncultured bacterium 63.9%
- uncultured Acidobacteria bacterium 6.3%
- uncultured Ktedonobacter sp. 3.3%
- uncultured forest soil bacterium 3.0%
- uncultured Acidobacteriaceae bacterium 2.8%
- uncultured Ktedobacteria bacterium 2.0%
- uncultured archaeon 1.3%
- everything else 17.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 84% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 82% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 80% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 78% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.