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SAMN16294739
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
55,304
Reads
863
Observed features
5.44
Shannon
0.805
Evenness
863
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.59
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805508
Per-run QC
- 16S identity
- 98.8%
- Q30
- 50.6%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 44.3%
- Bacteroidota 14.5%
- Pseudomonadota 14.3%
- Myxococcota 6.8%
- Acidobacteriota 4.5%
- Actinomycetota 3.7%
- Gemmatimonadota 3.7%
- everything else 8.2%
- Clostridia 24.3%
- Bacilli 17.1%
- Bacteroidia 14.5%
- Gammaproteobacteria 7.6%
- Alphaproteobacteria 6.7%
- Myxococcia 4.6%
- Gemmatimonadia 3.3%
- everything else 22.0%
- Bacillales 16.1%
- Bacteroidales 10.8%
- Oscillospirales 6.6%
- Burkholderiales 6.5%
- Incertae Sedis 5.0%
- Myxococcales 4.6%
- Lachnospirales 4.6%
- everything else 45.8%
- Bacillaceae 16.0%
- Prolixibacteraceae 10.5%
- Incertae Sedis 7.2%
- Oscillospiraceae 5.7%
- Lachnospiraceae 4.6%
- Sphingomonadaceae 4.0%
- Comamonadaceae 3.6%
- everything else 48.5%
- Incertae Sedis 27.5%
- Peribacillus 13.8%
- WCHB1-32 10.4%
- Ruminiclostridium 4.1%
- Sphingomonas 3.2%
- Gracilibacter 3.1%
- Anaeromyxobacter 2.2%
- everything else 35.8%
- uncultured bacterium 75.0%
- Bacillus huizhouensis 4.8%
- metagenome 1.4%
- uncultured Gracilibacter sp. 1.3%
- Desulfitobacterium sp. PR 1.3%
- uncultured soil bacterium 0.9%
- uncultured Bacteroidetes bacterium 0.8%
- everything else 14.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 76% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 50% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- composition 50% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.