opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN16294740
Soil
- 1 run(s)
- Illumina HiSeq 2500
- V4
- trimmed
- 50cm
derived from this sample's metadata and per-run QC
57,439
Reads
602
Observed features
4.753
Shannon
0.743
Evenness
602
Chao1
Where and when
- Collected
- 2018-06
- Depth
- 50cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 29.58, 111.6
- Platforms
- Illumina HiSeq 2500
Runs
SRR12805507
Per-run QC
- 16S identity
- 98.9%
- Q30
- 49.2%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Bacillota 49.1%
- Bacteroidota 20.3%
- Pseudomonadota 10.4%
- Cyanobacteriota 5.6%
- Actinomycetota 3.7%
- Myxococcota 3.4%
- Chloroflexota 1.9%
- everything else 5.6%
- Bacilli 25.9%
- Clostridia 21.0%
- Bacteroidia 20.3%
- Cyanobacteriia 5.6%
- Alphaproteobacteria 5.5%
- Gammaproteobacteria 5.0%
- Actinobacteria 2.7%
- everything else 14.0%
- Bacillales 24.0%
- Bacteroidales 17.3%
- Oscillospirales 5.4%
- Cyanobacteriales 5.0%
- Incertae Sedis 5.0%
- Lachnospirales 4.5%
- Burkholderiales 4.1%
- everything else 34.6%
- Bacillaceae 20.8%
- Prolixibacteraceae 17.0%
- Oscillospiraceae 4.9%
- Lachnospiraceae 4.5%
- Incertae Sedis 4.4%
- Gracilibacteraceae 3.7%
- Coleofasciculaceae 3.2%
- everything else 41.4%
- Incertae Sedis 18.9%
- WCHB1-32 17.0%
- Peribacillus 15.1%
- Schinkia 4.8%
- Gracilibacter 3.7%
- Ruminiclostridium 3.7%
- Lysinibacillus 3.1%
- everything else 33.8%
- uncultured bacterium 67.3%
- Bacillus huizhouensis 8.9%
- Lysinibacillus sp. 3.1%
- uncultured Gracilibacter sp. 1.8%
- Ruminiclostridium hungatei 1.3%
- Desulfitobacterium sp. PR 1.3%
- uncultured Sedimentibacter sp. 1.1%
- everything else 15.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 76% similar (genus)
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- same collection date
- shared: 50cm, Illumina HiSeq 2500
- same collection date
- shared: 50cm, Illumina HiSeq 2500
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA666233-20260926/.