opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN24847862
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 60
derived from this sample's metadata and per-run QC
63,534
Reads
82
Observed features
3.857
Shannon
0.875
Evenness
82
Chao1
Where and when
- Collected
- 2016-05-23
- Depth
- 60
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562371
Per-run QC
- 16S identity
- 99.7%
- Q30
- 91.2%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_1 · Bacteroides 8,188 (12.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Deinococcota 41.4%
- Bacteroidota 15.1%
- Bacillota 12.5%
- Actinomycetota 10.6%
- Rhodothermota 10.5%
- Pseudomonadota 9.9%
- Deinococci 41.4%
- Bacteroidia 15.1%
- Actinobacteria 10.6%
- Rhodothermia 10.5%
- Gammaproteobacteria 9.9%
- Bacilli 6.2%
- Clostridia 6.0%
- everything else 0.3%
- Thermales 41.4%
- Bacteroidales 14.9%
- Bifidobacteriales 10.5%
- Rhodothermales 10.5%
- Enterobacterales 9.2%
- Lachnospirales 4.5%
- Lactobacillales 4.0%
- everything else 4.9%
- Thermaceae 41.4%
- Bacteroidaceae 14.9%
- Bifidobacteriaceae 10.5%
- Rhodothermaceae 10.5%
- Aeromonadaceae 4.7%
- Lachnospiraceae 4.5%
- Enterobacteriaceae 4.5%
- everything else 9.0%
- Thermus 41.4%
- Bacteroides 14.9%
- Bifidobacterium 10.5%
- Rhodothermus 10.5%
- Aeromonas 4.7%
- Enterobacter 3.2%
- Streptococcus 2.3%
- everything else 12.6%
- uncultured bacterium 34.8%
- Thermus parvatiensis 29.2%
- Thermus thermophilus JL-18 6.6%
- Bifidobacterium bifidum 5.5%
- Bifidobacterium longum 5.0%
- Aeromonas sp. 4.7%
- Thermus thermophilus SG0.5JP17-16 3.3%
- everything else 10.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 70% similar (genus)
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.