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SAMN24847869
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 350
derived from this sample's metadata and per-run QC
47,753
Reads
111
Observed features
4.247
Shannon
0.902
Evenness
111
Chao1
Where and when
- Collected
- 2016-05-18
- Depth
- 350
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562369
Per-run QC
- 16S identity
- 99.7%
- Q30
- 92.2%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.2%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 43.5%
- Bacillota 31.4%
- Bacteroidota 17.6%
- Actinomycetota 5.4%
- Myxococcota 1.0%
- Nitrospirota 0.8%
- Acidobacteriota 0.1%
- everything else 0.1%
- Gammaproteobacteria 41.4%
- Bacteroidia 17.6%
- Bacilli 16.6%
- Desulfotomaculia 11.3%
- Actinobacteria 5.1%
- Alphaproteobacteria 2.1%
- Clostridia 2.0%
- everything else 3.8%
- Enterobacterales 22.0%
- Bacteroidales 16.7%
- Pseudomonadales 15.4%
- Lactobacillales 11.5%
- Desulfotomaculales 10.6%
- Bifidobacteriales 4.7%
- Exiguobacterales 3.4%
- everything else 15.8%
- Bacteroidaceae 16.7%
- Aeromonadaceae 12.7%
- Desulfurisporaceae 10.6%
- Moraxellaceae 9.7%
- Enterobacteriaceae 9.2%
- Lactobacillaceae 7.0%
- Pseudomonadaceae 5.7%
- everything else 28.5%
- Bacteroides 16.7%
- Aeromonas 12.7%
- Acinetobacter 9.7%
- Enterobacter 8.9%
- Pseudomonas 5.7%
- Bifidobacterium 4.7%
- Desulfocucumis 4.4%
- everything else 37.3%
- uncultured bacterium 33.8%
- Aeromonas sp. 11.5%
- Enterobacter sp. 6.5%
- uncultured Acinetobacter sp. 5.9%
- Pseudomonas stutzeri 5.7%
- uncultured Firmicutes bacterium 4.3%
- Leuconostoc carnosum 4.1%
- everything else 28.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 63% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 62% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4-V5
- composition 52% similar (genus)
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.