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SAMN24847867
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 271
derived from this sample's metadata and per-run QC
63,119
Reads
161
Observed features
4.431
Shannon
0.872
Evenness
161
Chao1
Where and when
- Collected
- 2016-05-20
- Depth
- 271
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562368
Per-run QC
- 16S identity
- 95.9%
- Q30
- 92.4%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 56.1%
- Bacillota 12.8%
- Bacteroidota 11.7%
- Actinomycetota 5.6%
- Cyanobacteriota 3.3%
- Chloroflexota 2.8%
- Nitrospirota 1.4%
- everything else 6.3%
- Gammaproteobacteria 37.1%
- Alphaproteobacteria 19.0%
- Bacteroidia 11.7%
- Bacilli 8.2%
- Actinobacteria 5.5%
- Cyanobacteriia 3.1%
- Clostridia 2.8%
- everything else 12.7%
- Enterobacterales 18.6%
- Burkholderiales 10.5%
- Bacteroidales 10.4%
- Hyphomicrobiales 10.0%
- Bifidobacteriales 5.3%
- Lactobacillales 4.5%
- Pseudomonadales 3.6%
- everything else 37.1%
- Enterobacteriaceae 10.0%
- Bacteroidaceae 9.9%
- Aeromonadaceae 8.6%
- Rhizobiaceae 8.5%
- Bifidobacteriaceae 5.3%
- Rhodocyclaceae 4.4%
- Incertae Sedis 4.0%
- everything else 49.2%
- Incertae Sedis 15.9%
- Enterobacter 10.0%
- Bacteroides 9.9%
- Aeromonas 8.6%
- Rhizobium 6.7%
- Bifidobacterium 5.3%
- Rugosibacter 4.4%
- everything else 39.2%
- uncultured bacterium 46.9%
- Aeromonas sp. 8.6%
- Enterobacter sp. 6.8%
- Bifidobacterium bifidum 3.7%
- uncultured Thiobacillus sp. 3.3%
- Exiguobacterium sp. m030608c 3.1%
- Rhizobium sp. MBB1 3.0%
- everything else 24.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 57% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 53% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 52% similar (genus)
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.