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SAMN24847866
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 40
derived from this sample's metadata and per-run QC
41,394
Reads
70
Observed features
3.835
Shannon
0.903
Evenness
70
Chao1
Where and when
- Collected
- 2016-05-24
- Depth
- 40
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562364
Per-run QC
- 16S identity
- 98.3%
- Q30
- 92.0%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_479 · Bacteroides 4,872 (11.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 68.4%
- Bacteroidota 12.4%
- Bacillota 9.2%
- Actinomycetota 3.6%
- Verrucomicrobiota 2.4%
- Nitrospirota 1.7%
- Myxococcota 1.6%
- everything else 0.7%
- Gammaproteobacteria 67.5%
- Bacteroidia 12.4%
- Bacilli 7.2%
- Actinobacteria 3.6%
- Omnitrophia 2.4%
- Desulfotomaculia 2.0%
- Thermodesulfovibrionia 1.7%
- everything else 3.2%
- Enterobacterales 55.6%
- Bacteroidales 11.8%
- Pseudomonadales 8.9%
- Bifidobacteriales 3.6%
- Exiguobacterales 3.1%
- Lactobacillales 2.9%
- Omnitrophales 2.4%
- everything else 11.5%
- Aeromonadaceae 39.5%
- Enterobacteriaceae 16.2%
- Bacteroidaceae 11.8%
- Moraxellaceae 5.8%
- Incertae Sedis 3.9%
- Bifidobacteriaceae 3.6%
- Pseudomonadaceae 3.1%
- everything else 16.1%
- Aeromonas 39.5%
- Enterobacter 16.2%
- Bacteroides 11.8%
- Acinetobacter 5.8%
- Incertae Sedis 3.9%
- Bifidobacterium 3.6%
- Pseudomonas 3.1%
- everything else 16.1%
- Aeromonas sp. 39.5%
- uncultured bacterium 26.6%
- Enterobacter sp. 16.2%
- Bifidobacterium longum 3.6%
- Pseudomonas stutzeri 3.1%
- uncultured Acinetobacter sp. 3.0%
- Enterococcus saccharolyticus 2.3%
- everything else 5.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4-V5
- composition 77% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 63% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 60% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 57% similar (genus)
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.