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SAMN24847864
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 150
derived from this sample's metadata and per-run QC
36,779
Reads
79
Observed features
3.956
Shannon
0.905
Evenness
79
Chao1
Where and when
- Collected
- 2016-05-18
- Depth
- 150
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562365
Per-run QC
- 16S identity
- 99.7%
- Q30
- 92.1%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 44.9%
- Bacillota 27.1%
- Actinomycetota 10.2%
- Bacteroidota 10.1%
- Nitrospirota 3.5%
- Deinococcota 2.1%
- Myxococcota 1.2%
- everything else 0.9%
- Gammaproteobacteria 43.3%
- Bacilli 20.0%
- Actinobacteria 10.2%
- Bacteroidia 10.1%
- Thermodesulfovibrionia 3.5%
- Desulfotomaculia 2.5%
- Deinococci 2.1%
- everything else 8.3%
- Enterobacterales 30.6%
- Lactobacillales 15.7%
- Bifidobacteriales 10.0%
- Bacteroidales 9.4%
- Pseudomonadales 7.1%
- Burkholderiales 5.1%
- Exiguobacterales 2.8%
- everything else 19.3%
- Enterobacteriaceae 18.0%
- Aeromonadaceae 12.4%
- Lactobacillaceae 12.3%
- Bifidobacteriaceae 10.0%
- Bacteroidaceae 9.1%
- Pseudomonadaceae 3.6%
- Moraxellaceae 3.4%
- everything else 31.1%
- Enterobacter 15.8%
- Aeromonas 12.4%
- Bifidobacterium 10.0%
- Bacteroides 9.1%
- Leuconostoc 6.7%
- Latilactobacillus 5.4%
- Pseudomonas 3.6%
- everything else 37.0%
- uncultured bacterium 26.7%
- Enterobacter sp. 15.8%
- Aeromonas sp. 12.4%
- Bifidobacterium bifidum 6.7%
- Leuconostoc carnosum 6.7%
- Lactobacillus sakei 5.4%
- Pseudomonas stutzeri 3.6%
- everything else 22.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 62% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4-V5
- composition 60% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 53% similar (genus)
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.