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SAMN24847870
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 137
derived from this sample's metadata and per-run QC
45,183
Reads
51
Observed features
3.444
Shannon
0.876
Evenness
51
Chao1
Where and when
- Collected
- 2016-05-24
- Depth
- 137
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562362
Per-run QC
- 16S identity
- 98.8%
- Q30
- 91.4%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.8%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 25.1%
- Actinomycetota 18.7%
- Deinococcota 17.7%
- Pseudomonadota 16.5%
- Bacteroidota 12.0%
- Rhodothermota 10.0%
- Actinobacteria 18.3%
- Deinococci 17.7%
- Gammaproteobacteria 16.4%
- Clostridia 16.3%
- Bacteroidia 12.0%
- Rhodothermia 10.0%
- Bacilli 8.6%
- everything else 0.6%
- Bifidobacteriales 18.2%
- Thermales 17.7%
- Enterobacterales 15.5%
- Lachnospirales 13.5%
- Bacteroidales 12.0%
- Rhodothermales 10.0%
- Erysipelotrichales 4.8%
- everything else 8.3%
- Bifidobacteriaceae 18.2%
- Thermaceae 17.7%
- Lachnospiraceae 13.5%
- Bacteroidaceae 11.9%
- Aeromonadaceae 10.6%
- Rhodothermaceae 10.0%
- Enterobacteriaceae 4.9%
- everything else 13.2%
- Bifidobacterium 18.2%
- Thermus 17.7%
- Bacteroides 11.9%
- Aeromonas 10.6%
- Rhodothermus 10.0%
- Enterobacter 4.9%
- Mediterraneibacter 4.4%
- everything else 22.3%
- uncultured bacterium 44.7%
- Bifidobacterium catenulatum subsp. kashiwanohense 11.5%
- Aeromonas sp. 10.6%
- Thermus thermophilus SG0.5JP17-16 8.2%
- Thermus parvatiensis 6.2%
- Enterobacter sp. 4.9%
- Bifidobacterium bifidum 3.6%
- everything else 10.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 70% similar (genus)
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- same collection date
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.