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SAMN24847863
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- missing
derived from this sample's metadata and per-run QC
72,241
Reads
116
Observed features
3.86
Shannon
0.812
Evenness
116
Chao1
Where and when
- Collected
- 2016-05-24
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562370
Per-run QC
- 16S identity
- 95.1%
- Q30
- 92.1%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_257 · Aeromonas 5,309 (7.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 65.1%
- Bacillota 11.1%
- Actinomycetota 5.7%
- Bacteroidota 5.0%
- Schekmanbacteria 2.2%
- Sva0485 1.7%
- Nitrospirota 1.5%
- everything else 7.9%
- Gammaproteobacteria 64.5%
- Incertae Sedis 6.1%
- Actinobacteria 5.7%
- Bacilli 5.1%
- Bacteroidia 5.0%
- Desulfotomaculia 3.4%
- Thermodesulfovibrionia 1.5%
- everything else 8.8%
- Enterobacterales 57.5%
- Incertae Sedis 10.6%
- Bifidobacteriales 5.7%
- Bacteroidales 4.9%
- Pseudomonadales 4.1%
- Ammonifexales 3.4%
- Lactobacillales 2.7%
- everything else 11.1%
- Aeromonadaceae 42.3%
- Enterobacteriaceae 15.2%
- Incertae Sedis 12.8%
- Bifidobacteriaceae 5.7%
- Bacteroidaceae 4.8%
- Ammonificaceae 3.4%
- Moraxellaceae 2.5%
- everything else 13.4%
- Aeromonas 42.3%
- Enterobacter 14.4%
- Incertae Sedis 13.2%
- Bifidobacterium 5.7%
- Bacteroides 4.8%
- Thermodesulfitimonas 3.4%
- Acinetobacter 2.5%
- everything else 13.8%
- Aeromonas sp. 42.3%
- uncultured bacterium 21.2%
- Enterobacter sp. 14.4%
- Bifidobacterium bifidum 5.7%
- uncultured Acinetobacter sp. 2.2%
- uncultured Syntrophobacterales bacterium 2.2%
- uncultured organism 1.7%
- everything else 10.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4-V5
- composition 72% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 57% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 54% similar (genus)
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.