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SAMN24847868
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 130
derived from this sample's metadata and per-run QC
50,531
Reads
30
Observed features
2.923
Shannon
0.859
Evenness
30
Chao1
Where and when
- Collected
- 2016-05-28
- Depth
- 130
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562363
Per-run QC
- 16S identity
- 99.8%
- Q30
- 92.2%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_146 · Aeromonas 7,377 (14.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 87.2%
- Bacteroidota 6.1%
- Bacillota 4.5%
- Actinomycetota 2.2%
- Candidatus Kapabacteria 0.0%
- Gammaproteobacteria 87.2%
- Bacteroidia 6.1%
- Bacilli 2.7%
- Actinobacteria 2.2%
- Desulfotomaculia 1.3%
- Desulfitobacteriia 0.4%
- Clostridia 0.2%
- everything else 0.1%
- Enterobacterales 80.8%
- Bacteroidales 6.1%
- Pseudomonadales 5.6%
- Bifidobacteriales 2.2%
- Exiguobacterales 1.9%
- Ammonifexales 1.3%
- Lactobacillales 0.9%
- everything else 1.5%
- Aeromonadaceae 64.7%
- Enterobacteriaceae 16.1%
- Bacteroidaceae 6.1%
- Moraxellaceae 3.5%
- Bifidobacteriaceae 2.2%
- Pseudomonadaceae 2.1%
- Exiguobacteraceae 1.9%
- everything else 3.6%
- Aeromonas 64.7%
- Enterobacter 16.1%
- Bacteroides 6.1%
- Acinetobacter 3.5%
- Bifidobacterium 2.2%
- Pseudomonas 2.1%
- Exiguobacterium 1.9%
- everything else 3.6%
- Aeromonas sp. 64.7%
- Enterobacter sp. 16.1%
- uncultured bacterium 8.5%
- uncultured Acinetobacter sp. 3.1%
- Bifidobacterium bifidum 2.2%
- Pseudomonas indoloxydans 2.1%
- Enterococcus saccharolyticus 0.9%
- everything else 2.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 77% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 72% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 53% similar (genus)
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.