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SAMN24847865
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 300
derived from this sample's metadata and per-run QC
73,430
Reads
67
Observed features
3.706
Shannon
0.881
Evenness
67
Chao1
Where and when
- Collected
- 2016-05-22
- Depth
- 300
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562367
Per-run QC
- 16S identity
- 99.7%
- Q30
- 92.1%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 45.5%
- Bacillota 24.1%
- Thermodesulfobacteriota 18.5%
- Bacteroidota 5.4%
- Actinomycetota 3.5%
- Deinococcota 1.3%
- Campylobacterota 1.3%
- everything else 0.4%
- Gammaproteobacteria 44.6%
- Bacilli 19.3%
- Desulfovibrionia 17.9%
- Bacteroidia 5.4%
- Clostridia 3.8%
- Actinobacteria 3.5%
- Deinococci 1.3%
- everything else 4.2%
- Enterobacterales 36.2%
- Desulfovibrionales 17.9%
- Lactobacillales 11.4%
- Bacteroidales 5.4%
- Staphylococcales 5.0%
- Pseudomonadales 4.8%
- Burkholderiales 3.6%
- everything else 15.8%
- Aeromonadaceae 27.7%
- Desulfovibrionaceae 17.4%
- Enterobacteriaceae 8.5%
- Streptococcaceae 6.1%
- Bacteroidaceae 5.4%
- Staphylococcaceae 5.0%
- Moraxellaceae 3.7%
- everything else 26.3%
- Aeromonas 27.7%
- Humidesulfovibrio 17.4%
- Enterobacter 8.5%
- Streptococcus 6.1%
- Bacteroides 5.4%
- Staphylococcus 5.0%
- Acinetobacter 3.7%
- everything else 26.3%
- uncultured bacterium 28.1%
- Aeromonas sp. 27.7%
- Enterobacter sp. 8.5%
- Staphylococcus sp. ECH3 4.9%
- Acinetobacter johnsonii CIP 64.6 3.4%
- uncultured organism 3.2%
- Bifidobacterium bifidum 2.8%
- everything else 21.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 57% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 54% similar (genus)
- shared: Illumina MiSeq, V4-V5
- composition 53% similar (genus)
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.