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SAMN24847871
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 0
derived from this sample's metadata and per-run QC
83,555
Reads
145
Observed features
4.23
Shannon
0.85
Evenness
145
Chao1
Where and when
- Collected
- 2016-05-28
- Depth
- 0
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562361
Per-run QC
- 16S identity
- 97.8%
- Q30
- 92.9%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_368 · Sulfurovum 5,096 (6.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Campylobacterota 66.9%
- Pseudomonadota 26.7%
- Bacteroidota 2.7%
- Verrucomicrobiota 0.8%
- Thermodesulfobacteriota 0.8%
- Spirochaetota 0.4%
- Sva0485 0.4%
- everything else 1.4%
- Campylobacteria 66.9%
- Gammaproteobacteria 26.6%
- Bacteroidia 2.7%
- Omnitrophia 0.7%
- Incertae Sedis 0.4%
- Dissulfuribacteria 0.3%
- Spirochaetia 0.3%
- everything else 2.0%
- Campylobacterales 66.9%
- Thiomicrospirales 11.0%
- Enterobacterales 9.6%
- Halothiobacillales 3.0%
- Ectothiorhodospirales 2.6%
- Bacteroidetes VC2.1 Bac22 2.3%
- Incertae Sedis 0.8%
- everything else 3.8%
- Sulfurimonadaceae 53.1%
- Thiomicrospiraceae 11.0%
- Sulfurovaceae 9.7%
- Aeromonadaceae 7.9%
- Incertae Sedis 3.7%
- Thioreductoraceae 3.0%
- Acidihalobacteraceae 2.6%
- everything else 8.9%
- Sulfurimonas 53.1%
- Sulfurovum 9.7%
- Aeromonas 7.9%
- Incertae Sedis 6.4%
- Thiomicrorhabdus 5.8%
- Thioreductor 3.0%
- Acidihalobacter 2.6%
- everything else 11.4%
- uncultured bacterium 54.5%
- uncultured Epsilonproteobacteria bacterium 14.4%
- Aeromonas sp. 7.9%
- uncultured proteobacterium 7.4%
- uncultured bacterium S17sBac16 3.0%
- Halothiobacillus neapolitanus 2.4%
- Hydrogenovibrio sp. Milos-T1 1.8%
- everything else 8.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- shared: 0, Illumina MiSeq
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.