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SAMN24847872
MIMARKS Survey related sample from hydrothermal vent metagenome
- 1 run(s)
- Illumina MiSeq
- V4-V5
- trimmed
- 0
derived from this sample's metadata and per-run QC
87,738
Reads
121
Observed features
4.192
Shannon
0.874
Evenness
121
Chao1
Where and when
- Collected
- 2016-05-29
- Depth
- 0
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
SRR17562366
Per-run QC
- 16S identity
- 95.5%
- Q30
- 92.4%
- Region
- V4-V5
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Campylobacterota 48.3%
- Pseudomonadota 28.6%
- Thermodesulfobacteriota 12.7%
- Bacteroidota 3.4%
- Spirochaetota 1.8%
- Chloroflexota 1.7%
- Patescibacteria 1.5%
- everything else 2.0%
- Campylobacteria 48.3%
- Gammaproteobacteria 28.6%
- Desulfobulbia 10.1%
- Bacteroidia 3.4%
- Dissulfuribacteria 2.2%
- Anaerolineae 1.7%
- Leptospirae 1.6%
- everything else 4.1%
- Campylobacterales 48.3%
- Desulfobulbales 10.1%
- Halothiobacillales 8.5%
- Beggiatoales 6.3%
- Burkholderiales 4.8%
- Enterobacterales 4.3%
- Flavobacteriales 2.5%
- everything else 15.2%
- Sulfurovaceae 42.3%
- Halothiobacillaceae 8.5%
- Leucotrichaceae 6.3%
- Arcobacteraceae 4.5%
- Desulfocapsaceae 4.5%
- Incertae Sedis 4.5%
- Aeromonadaceae 3.6%
- everything else 25.8%
- Sulfurovum 42.3%
- Incertae Sedis 18.0%
- Thiothrix 6.3%
- Arcobacter 4.5%
- Desulfocapsa 4.5%
- Thiovirga 4.3%
- Aeromonas 3.6%
- everything else 16.6%
- uncultured prokaryote 35.4%
- uncultured bacterium 30.0%
- uncultured Epsilonproteobacteria bacterium 14.0%
- uncultured delta proteobacterium 4.6%
- Aeromonas sp. 3.6%
- uncultured Thiovirga sp. 3.2%
- uncultured Acidithiobacillus sp. 2.1%
- everything else 7.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- shared: Illumina MiSeq, V4-V5
- shared: 0, Illumina MiSeq
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
- shared: Illumina MiSeq, V4-V5
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA796316-20260926/.