opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38046997
Marchfeld_LowP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
11,318
Reads
488
Observed features
5.891
Shannon
0.952
Evenness
488
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591467
Per-run QC
- 16S identity
- 97.8%
- Q30
- 95.0%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_7815 · Incertae Sedis 20 (0.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 91.4%
- Archaea 8.6%
- Acidobacteriota 14.8%
- Pseudomonadota 14.3%
- Verrucomicrobiota 11.9%
- Actinomycetota 11.2%
- Bacillota 9.4%
- Thermoproteota 8.6%
- Bacteroidota 6.8%
- everything else 23.1%
- Verrucomicrobiia 11.9%
- Nitrososphaeria 8.6%
- Bacilli 8.4%
- Alphaproteobacteria 7.2%
- Gammaproteobacteria 7.1%
- Actinobacteria 7.0%
- Bacteroidia 6.8%
- everything else 43.1%
- Chthoniobacterales 8.9%
- Nitrososphaerales 8.6%
- Chloroplast 5.6%
- Bacillales 5.4%
- Burkholderiales 5.1%
- Incertae Sedis 4.9%
- Hyphomicrobiales 4.7%
- everything else 56.7%
- Incertae Sedis 20.1%
- Nitrososphaeraceae 8.6%
- Chthoniobacteraceae 7.9%
- Bacillaceae 5.4%
- Chitinophagaceae 4.2%
- Pyrinomonadaceae 3.6%
- Paenibacillaceae 2.9%
- everything else 47.3%
- Incertae Sedis 48.3%
- Candidatus Udaeobacter 7.0%
- Paenibacillus 2.8%
- Candidatus Solibacter 1.9%
- Sphingomonas 1.9%
- Neobacillus 1.6%
- Mycobacterium 1.6%
- everything else 34.9%
- uncultured bacterium 57.3%
- uncultured archaeon 5.3%
- metagenome 5.0%
- uncultured Acidobacteria bacterium 2.7%
- uncultured crenarchaeote 2.4%
- Bacillus sp. (in: Bacteria) 2.3%
- uncultured eukaryote 1.8%
- everything else 23.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- shared: 0.1 m, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.