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SAMN38049515
Wieselburg_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
22,030
Reads
770
Observed features
6.301
Shannon
0.948
Evenness
770
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596447
Per-run QC
- 16S identity
- 86.5%
- Q30
- 87.6%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 93.9%
- Archaea 6.1%
- Pseudomonadota 18.1%
- Actinomycetota 16.1%
- Acidobacteriota 14.9%
- Verrucomicrobiota 10.3%
- Bacillota 7.8%
- Planctomycetota 6.7%
- Thermoproteota 6.1%
- everything else 20.0%
- Alphaproteobacteria 11.3%
- Verrucomicrobiia 10.3%
- Actinobacteria 8.8%
- Bacilli 6.9%
- Gammaproteobacteria 6.8%
- Acidobacteriae 6.2%
- Planctomycetes 6.2%
- everything else 43.6%
- Chthoniobacterales 8.2%
- Nitrososphaerales 6.1%
- Hyphomicrobiales 6.1%
- Incertae Sedis 5.9%
- Burkholderiales 5.0%
- Chloroplast 4.3%
- Bacillales 4.0%
- everything else 60.5%
- Incertae Sedis 22.4%
- Chthoniobacteraceae 7.5%
- Nitrososphaeraceae 6.1%
- Bacillaceae 3.9%
- Sphingomonadaceae 3.6%
- Xanthobacteraceae 3.3%
- Pyrinomonadaceae 3.0%
- everything else 50.1%
- Incertae Sedis 47.1%
- Candidatus Udaeobacter 6.5%
- Sphingomonas 3.5%
- Paenibacillus 2.5%
- Nocardioides 2.2%
- Candidatus Solibacter 2.2%
- Mycobacterium 1.7%
- everything else 34.3%
- uncultured bacterium 61.2%
- uncultured archaeon 4.0%
- metagenome 3.7%
- uncultured Acidobacteria bacterium 2.6%
- uncultured eukaryote 1.7%
- Bacillus sp. (in: Bacteria) 1.2%
- uncultured forest soil bacterium 1.0%
- everything else 24.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 2021, trimmed
- composition 94% similar (genus)
- shared: 0.1 m, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.