opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38047011
Wieselburg_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
8,758
Reads
378
Observed features
5.621
Shannon
0.947
Evenness
378
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591459
Per-run QC
- 16S identity
- 91.6%
- Q30
- 95.0%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 94.5%
- Archaea 5.5%
- Acidobacteriota 15.8%
- Cyanobacteriota 15.0%
- Verrucomicrobiota 12.5%
- Pseudomonadota 12.3%
- Bacillota 9.7%
- Actinomycetota 8.1%
- Bacteroidota 6.3%
- everything else 20.3%
- Cyanobacteriia 15.0%
- Verrucomicrobiia 12.5%
- Acidobacteriae 8.9%
- Bacilli 8.0%
- Alphaproteobacteria 7.3%
- Bacteroidia 6.3%
- Nitrososphaeria 5.5%
- everything else 36.5%
- Chloroplast 14.6%
- Chthoniobacterales 9.7%
- Nitrososphaerales 5.5%
- Bacillales 5.1%
- Hyphomicrobiales 4.3%
- Chitinophagales 4.2%
- Terriglobales 3.9%
- everything else 52.7%
- Incertae Sedis 28.0%
- Chthoniobacteraceae 9.1%
- Nitrososphaeraceae 5.5%
- Bacillaceae 5.1%
- Chitinophagaceae 4.1%
- Pyrinomonadaceae 3.1%
- Paenibacillaceae 2.8%
- everything else 42.4%
- Incertae Sedis 50.7%
- Candidatus Udaeobacter 8.9%
- Paenibacillus 2.8%
- Candidatus Solibacter 2.6%
- Sphingomonas 1.8%
- Massilia 1.7%
- Neobacillus 1.6%
- everything else 30.0%
- uncultured bacterium 62.1%
- uncultured eukaryote 7.0%
- uncultured archaeon 4.7%
- metagenome 2.9%
- uncultured Acidobacteria bacterium 2.5%
- Bacillus sp. (in: Bacteria) 2.1%
- uncultured Verrucomicrobia bacterium 1.4%
- everything else 17.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.