opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38047009
Wieselburg_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
7,334
Reads
340
Observed features
5.51
Shannon
0.945
Evenness
340
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591392
Per-run QC
- 16S identity
- 96.7%
- Q30
- 94.8%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 94.3%
- Archaea 5.7%
- Acidobacteriota 15.0%
- Pseudomonadota 14.3%
- Cyanobacteriota 13.3%
- Bacillota 12.0%
- Verrucomicrobiota 11.5%
- Actinomycetota 8.8%
- Bacteroidota 7.2%
- everything else 18.0%
- Cyanobacteriia 13.3%
- Verrucomicrobiia 11.5%
- Bacilli 10.0%
- Acidobacteriae 9.0%
- Gammaproteobacteria 7.3%
- Bacteroidia 7.2%
- Alphaproteobacteria 7.0%
- everything else 34.8%
- Chloroplast 12.8%
- Chthoniobacterales 9.0%
- Bacillales 6.0%
- Burkholderiales 5.9%
- Nitrososphaerales 5.7%
- Chitinophagales 5.0%
- Terriglobales 4.9%
- everything else 50.6%
- Incertae Sedis 25.8%
- Chthoniobacteraceae 8.7%
- Bacillaceae 6.0%
- Nitrososphaeraceae 5.7%
- Chitinophagaceae 5.0%
- Paenibacillaceae 3.6%
- Oxalobacteraceae 2.7%
- everything else 42.6%
- Incertae Sedis 45.4%
- Candidatus Udaeobacter 8.1%
- Paenibacillus 3.6%
- Sphingomonas 2.3%
- Candidatus Solibacter 2.3%
- Massilia 2.2%
- Neobacillus 1.9%
- everything else 34.3%
- uncultured bacterium 57.8%
- uncultured eukaryote 5.1%
- uncultured archaeon 4.8%
- uncultured Acidobacteria bacterium 3.4%
- Bacillus sp. (in: Bacteria) 2.8%
- metagenome 1.6%
- uncultured Verrucomicrobia bacterium 1.6%
- everything else 22.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 91% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 91% similar (genus)
- shared: 0.1 m, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.