opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38047001
Marchfeld_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
7,838
Reads
357
Observed features
5.517
Shannon
0.939
Evenness
357
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591436
Per-run QC
- 16S identity
- 98.1%
- Q30
- 94.8%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_7815 · Incertae Sedis 10 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 93.1%
- Archaea 6.9%
- Cyanobacteriota 17.5%
- Acidobacteriota 15.5%
- Pseudomonadota 13.1%
- Verrucomicrobiota 12.9%
- Bacillota 8.7%
- Thermoproteota 6.9%
- Bacteroidota 6.7%
- everything else 18.7%
- Cyanobacteriia 17.5%
- Verrucomicrobiia 12.9%
- Acidobacteriae 7.8%
- Bacilli 7.7%
- Alphaproteobacteria 7.1%
- Nitrososphaeria 6.9%
- Bacteroidia 6.7%
- everything else 33.5%
- Chloroplast 17.0%
- Chthoniobacterales 9.5%
- Nitrososphaerales 6.9%
- Burkholderiales 5.2%
- Bacillales 4.7%
- Chitinophagales 4.6%
- Hyphomicrobiales 4.5%
- everything else 47.6%
- Incertae Sedis 30.6%
- Chthoniobacteraceae 8.8%
- Nitrososphaeraceae 6.9%
- Bacillaceae 4.7%
- Chitinophagaceae 4.6%
- Pyrinomonadaceae 3.3%
- Paenibacillaceae 2.8%
- everything else 38.3%
- Incertae Sedis 54.0%
- Candidatus Udaeobacter 8.3%
- Paenibacillus 2.8%
- Candidatus Solibacter 2.4%
- Massilia 2.0%
- Sphingomonas 1.4%
- Neobacillus 1.4%
- everything else 27.6%
- uncultured bacterium 54.5%
- uncultured eukaryote 8.4%
- uncultured archaeon 5.7%
- metagenome 4.1%
- uncultured Acidobacteria bacterium 3.7%
- Bacillus sp. (in: Bacteria) 2.0%
- uncultured Verrucomicrobia bacterium 1.2%
- everything else 20.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.