opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38047002
Marchfeld_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
6,844
Reads
322
Observed features
5.476
Shannon
0.948
Evenness
322
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591431
Per-run QC
- 16S identity
- 97.4%
- Q30
- 94.8%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 93.1%
- Archaea 6.9%
- Acidobacteriota 17.5%
- Cyanobacteriota 13.5%
- Verrucomicrobiota 13.1%
- Pseudomonadota 13.1%
- Bacillota 9.6%
- Actinomycetota 7.2%
- Thermoproteota 6.9%
- everything else 19.2%
- Cyanobacteriia 13.5%
- Verrucomicrobiia 13.1%
- Acidobacteriae 10.2%
- Bacilli 9.0%
- Alphaproteobacteria 7.0%
- Nitrososphaeria 6.9%
- Gammaproteobacteria 6.1%
- everything else 34.1%
- Chloroplast 13.2%
- Chthoniobacterales 9.2%
- Nitrososphaerales 6.9%
- Bacillales 6.2%
- Burkholderiales 4.8%
- Chitinophagales 4.6%
- Hyphomicrobiales 4.4%
- everything else 50.7%
- Incertae Sedis 26.3%
- Chthoniobacteraceae 8.1%
- Nitrososphaeraceae 6.9%
- Bacillaceae 6.2%
- Chitinophagaceae 4.4%
- Pyrinomonadaceae 3.2%
- Pedosphaeraceae 3.1%
- everything else 41.8%
- Incertae Sedis 50.2%
- Candidatus Udaeobacter 7.2%
- Candidatus Solibacter 3.0%
- Paenibacillus 2.6%
- Sphingomonas 1.8%
- Bryobacter 1.8%
- Neobacillus 1.7%
- everything else 31.6%
- uncultured bacterium 56.9%
- uncultured archaeon 6.2%
- uncultured eukaryote 5.6%
- uncultured Acidobacteria bacterium 4.0%
- uncultured Verrucomicrobia bacterium 2.6%
- metagenome 2.6%
- Bacillus sp. (in: Bacteria) 2.4%
- everything else 19.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.