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SAMN38046998
Marchfeld_LowP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
9,483
Reads
402
Observed features
5.628
Shannon
0.939
Evenness
402
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591404
Per-run QC
- 16S identity
- 97.5%
- Q30
- 95.0%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 94.3%
- Archaea 5.7%
- Cyanobacteriota 17.3%
- Acidobacteriota 17.2%
- Pseudomonadota 12.8%
- Verrucomicrobiota 10.8%
- Bacillota 10.0%
- Actinomycetota 7.0%
- Bacteroidota 6.5%
- everything else 18.5%
- Cyanobacteriia 17.3%
- Verrucomicrobiia 10.8%
- Acidobacteriae 10.5%
- Bacilli 8.2%
- Bacteroidia 6.5%
- Gammaproteobacteria 6.4%
- Alphaproteobacteria 6.4%
- everything else 34.1%
- Chloroplast 17.1%
- Chthoniobacterales 7.1%
- Nitrososphaerales 5.7%
- Burkholderiales 5.4%
- Terriglobales 5.1%
- Bacillales 4.8%
- Chitinophagales 4.5%
- everything else 50.2%
- Incertae Sedis 31.6%
- Chthoniobacteraceae 7.0%
- Nitrososphaeraceae 5.7%
- Bacillaceae 4.8%
- Chitinophagaceae 4.5%
- Solibacteraceae 3.3%
- Pedosphaeraceae 3.1%
- everything else 40.0%
- Incertae Sedis 52.2%
- Candidatus Udaeobacter 6.7%
- Candidatus Solibacter 3.3%
- Paenibacillus 3.0%
- Massilia 2.4%
- Sphingomonas 1.5%
- Clostridium 1.4%
- everything else 29.4%
- uncultured bacterium 57.5%
- uncultured eukaryote 8.2%
- uncultured archaeon 5.4%
- uncultured Acidobacteria bacterium 3.6%
- metagenome 2.5%
- Bacillus sp. (in: Bacteria) 1.9%
- uncultured Verrucomicrobia bacterium 1.7%
- everything else 19.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 91% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.