opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38047010
Wieselburg_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
10,305
Reads
423
Observed features
5.689
Shannon
0.941
Evenness
423
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591465
Per-run QC
- 16S identity
- 94.7%
- Q30
- 94.1%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 95.0%
- Archaea 5.0%
- Cyanobacteriota 19.0%
- Acidobacteriota 16.5%
- Verrucomicrobiota 11.5%
- Pseudomonadota 11.2%
- Bacillota 10.0%
- Bacteroidota 8.8%
- Actinomycetota 5.9%
- everything else 17.1%
- Cyanobacteriia 19.0%
- Verrucomicrobiia 11.5%
- Acidobacteriae 10.7%
- Bacteroidia 8.8%
- Bacilli 8.5%
- Alphaproteobacteria 5.8%
- Gammaproteobacteria 5.5%
- everything else 30.3%
- Chloroplast 18.7%
- Chthoniobacterales 8.3%
- Chitinophagales 5.5%
- Terriglobales 5.3%
- Bacillales 5.1%
- Nitrososphaerales 5.0%
- Burkholderiales 4.4%
- everything else 47.8%
- Incertae Sedis 31.4%
- Chthoniobacteraceae 8.2%
- Chitinophagaceae 5.4%
- Bacillaceae 5.1%
- Nitrososphaeraceae 5.0%
- Paenibacillaceae 2.9%
- Pedosphaeraceae 2.8%
- everything else 39.2%
- Incertae Sedis 52.3%
- Candidatus Udaeobacter 7.8%
- Paenibacillus 2.9%
- Candidatus Solibacter 2.4%
- Massilia 1.5%
- Bryobacter 1.5%
- Ferruginibacter 1.5%
- everything else 30.1%
- uncultured bacterium 54.5%
- uncultured eukaryote 9.3%
- uncultured archaeon 4.5%
- uncultured Acidobacteria bacterium 3.8%
- metagenome 2.9%
- Bacillus sp. (in: Bacteria) 1.8%
- uncultured Verrucomicrobia bacterium 1.7%
- everything else 21.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.