opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38046999
Marchfeld_LowP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
5,859
Reads
282
Observed features
5.316
Shannon
0.942
Evenness
282
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591448
Per-run QC
- 16S identity
- 98.0%
- Q30
- 95.0%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 94.9%
- Archaea 5.1%
- Cyanobacteriota 21.3%
- Acidobacteriota 17.7%
- Verrucomicrobiota 11.6%
- Pseudomonadota 11.4%
- Bacillota 8.0%
- Bacteroidota 6.4%
- Planctomycetota 5.3%
- everything else 18.4%
- Cyanobacteriia 21.2%
- Verrucomicrobiia 11.6%
- Acidobacteriae 11.2%
- Bacilli 7.3%
- Bacteroidia 6.4%
- Alphaproteobacteria 6.1%
- Gammaproteobacteria 5.3%
- everything else 31.0%
- Chloroplast 20.5%
- Chthoniobacterales 7.7%
- Nitrososphaerales 5.1%
- Chitinophagales 4.9%
- Terriglobales 4.9%
- Bacillales 4.6%
- Burkholderiales 4.5%
- everything else 47.8%
- Incertae Sedis 33.8%
- Chthoniobacteraceae 7.3%
- Nitrososphaeraceae 5.1%
- Chitinophagaceae 4.7%
- Bacillaceae 4.6%
- Pedosphaeraceae 3.5%
- Oxalobacteraceae 3.1%
- everything else 37.9%
- Incertae Sedis 57.2%
- Candidatus Udaeobacter 6.3%
- Candidatus Solibacter 2.7%
- Paenibacillus 2.6%
- Bryobacter 1.9%
- Massilia 1.7%
- Pelotalea 1.7%
- everything else 25.8%
- uncultured bacterium 62.7%
- uncultured eukaryote 7.6%
- uncultured archaeon 4.6%
- uncultured Acidobacteria bacterium 3.0%
- uncultured Verrucomicrobia bacterium 1.9%
- metagenome 1.5%
- Bacillus sp. (in: Bacteria) 1.5%
- everything else 17.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 91% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 89% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 89% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.