opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38047000
Marchfeld_LowP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
15,837
Reads
598
Observed features
5.929
Shannon
0.927
Evenness
598
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591442
Per-run QC
- 16S identity
- 97.7%
- Q30
- 94.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 80.4%
- Archaea 19.6%
- Thermoproteota 19.6%
- Acidobacteriota 13.4%
- Pseudomonadota 11.8%
- Actinomycetota 10.0%
- Planctomycetota 9.8%
- Bacillota 9.0%
- Bacteroidota 6.9%
- everything else 19.4%
- Nitrososphaeria 19.6%
- Planctomycetes 8.8%
- Bacilli 8.7%
- Gammaproteobacteria 7.4%
- Bacteroidia 6.9%
- Vicinamibacteria 6.2%
- Verrucomicrobiia 5.7%
- everything else 36.8%
- Nitrososphaerales 19.6%
- Incertae Sedis 10.0%
- Bacillales 6.4%
- Vicinamibacterales 6.1%
- Pirellulales 6.1%
- Burkholderiales 4.6%
- Chitinophagales 2.7%
- everything else 44.6%
- Incertae Sedis 21.3%
- Nitrososphaeraceae 19.6%
- Pirellulaceae 6.1%
- Bacillaceae 5.9%
- Chitinophagaceae 2.6%
- Pedosphaeraceae 2.3%
- Vicinamibacteraceae 2.2%
- everything else 40.1%
- Incertae Sedis 58.6%
- Candidatus Nitrososphaera 3.3%
- Pirellula 2.6%
- Massilia 2.0%
- Niallia 2.0%
- Paenibacillus 1.9%
- Peribacillus 1.6%
- everything else 27.9%
- uncultured bacterium 52.1%
- uncultured archaeon 14.6%
- uncultured crenarchaeote 5.0%
- uncultured Acidobacteria bacterium 4.8%
- uncultured soil bacterium 1.8%
- Bacillus huizhouensis 1.6%
- Bacillus sp. (in: Bacteria) 1.5%
- everything else 18.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 93% similar (genus)
- shared: 0.1 m, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.