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SAMN38049521
Marchfeld_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
13,580
Reads
501
Observed features
5.798
Shannon
0.933
Evenness
501
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596456
Per-run QC
- 16S identity
- 95.9%
- Q30
- 87.6%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 308 (2.3%)
- ASV_4482 · Incertae Sedis 316 (2.3%)
- ASV_5593 · Incertae Sedis 183 (1.3%)
- ASV_6704 · Incertae Sedis 183 (1.3%)
- ASV_7815 · Incertae Sedis 165 (1.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 82.8%
- Archaea 17.2%
- Thermoproteota 17.1%
- Actinomycetota 16.0%
- Pseudomonadota 14.8%
- Acidobacteriota 12.9%
- Bacillota 9.0%
- Planctomycetota 8.7%
- Bacteroidota 6.2%
- everything else 15.4%
- Nitrososphaeria 17.1%
- Bacilli 8.6%
- Planctomycetes 8.1%
- Actinobacteria 7.7%
- Alphaproteobacteria 7.6%
- Vicinamibacteria 7.4%
- Gammaproteobacteria 7.2%
- everything else 36.2%
- Nitrososphaerales 17.1%
- Incertae Sedis 7.5%
- Vicinamibacterales 7.3%
- Bacillales 6.5%
- Pirellulales 5.4%
- Gaiellales 4.4%
- Hyphomicrobiales 4.2%
- everything else 47.6%
- Incertae Sedis 21.1%
- Nitrososphaeraceae 17.1%
- Bacillaceae 5.9%
- Pirellulaceae 5.4%
- Chitinophagaceae 3.8%
- Sphingomonadaceae 2.2%
- Pyrinomonadaceae 2.0%
- everything else 42.4%
- Incertae Sedis 54.2%
- Candidatus Nitrososphaera 2.7%
- Pirellula 2.5%
- Peribacillus 2.1%
- Sphingomonas 2.0%
- Paenibacillus 1.8%
- Niallia 1.6%
- everything else 33.1%
- uncultured bacterium 50.7%
- uncultured archaeon 12.9%
- uncultured Acidobacteria bacterium 4.5%
- uncultured crenarchaeote 4.3%
- uncultured soil bacterium 2.3%
- Bacillus huizhouensis 2.1%
- Bacillus sp. (in: Bacteria) 1.6%
- everything else 21.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- shared: 0.1 m, Illumina MiSeq
- composition 94% similar (genus)
- shared: 0.1 m, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.