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SAMN38047005
Wieselburg_LowP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
11,533
Reads
464
Observed features
5.734
Shannon
0.934
Evenness
464
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591414
Per-run QC
- 16S identity
- 94.6%
- Q30
- 94.9%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 228 (2.0%)
- ASV_4482 · Incertae Sedis 205 (1.8%)
- ASV_5593 · Incertae Sedis 175 (1.5%)
- ASV_6704 · Incertae Sedis 155 (1.3%)
- ASV_7815 · Incertae Sedis 160 (1.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 81.0%
- Archaea 19.0%
- Thermoproteota 19.0%
- Acidobacteriota 13.0%
- Pseudomonadota 12.4%
- Actinomycetota 10.7%
- Bacillota 10.5%
- Bacteroidota 8.2%
- Planctomycetota 8.0%
- everything else 18.2%
- Nitrososphaeria 19.0%
- Bacilli 9.9%
- Bacteroidia 8.2%
- Gammaproteobacteria 7.4%
- Planctomycetes 7.3%
- Vicinamibacteria 6.4%
- Verrucomicrobiia 6.2%
- everything else 35.6%
- Nitrososphaerales 19.0%
- Incertae Sedis 10.1%
- Bacillales 7.4%
- Vicinamibacterales 6.4%
- Pirellulales 5.1%
- Burkholderiales 4.4%
- Chitinophagales 3.9%
- everything else 43.8%
- Incertae Sedis 20.6%
- Nitrososphaeraceae 19.0%
- Bacillaceae 6.9%
- Pirellulaceae 5.1%
- Chitinophagaceae 3.7%
- Pedosphaeraceae 2.8%
- Paenibacillaceae 2.5%
- everything else 39.6%
- Incertae Sedis 57.2%
- Candidatus Nitrososphaera 2.9%
- Niallia 2.2%
- Paenibacillus 2.2%
- Peribacillus 1.9%
- Pir4 lineage 1.6%
- Pirellula 1.6%
- everything else 30.3%
- uncultured bacterium 50.2%
- uncultured archaeon 14.0%
- uncultured crenarchaeote 5.0%
- uncultured Acidobacteria bacterium 3.6%
- uncultured soil bacterium 2.4%
- Bacillus huizhouensis 1.9%
- uncultured Bacillus sp. 1.6%
- everything else 21.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.