opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38047008
Wieselburg_LowP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
13,360
Reads
538
Observed features
5.862
Shannon
0.932
Evenness
538
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591398
Per-run QC
- 16S identity
- 93.9%
- Q30
- 95.0%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 82.8%
- Archaea 17.2%
- Thermoproteota 17.2%
- Acidobacteriota 13.7%
- Pseudomonadota 13.6%
- Actinomycetota 12.0%
- Bacillota 9.0%
- Planctomycetota 8.7%
- Bacteroidota 7.8%
- everything else 18.1%
- Nitrososphaeria 17.2%
- Bacilli 8.5%
- Planctomycetes 8.0%
- Bacteroidia 7.8%
- Vicinamibacteria 7.5%
- Gammaproteobacteria 7.4%
- Actinobacteria 6.3%
- everything else 37.4%
- Nitrososphaerales 17.2%
- Incertae Sedis 9.2%
- Vicinamibacterales 7.5%
- Bacillales 6.3%
- Pirellulales 5.2%
- Burkholderiales 4.2%
- Hyphomicrobiales 3.5%
- everything else 47.0%
- Incertae Sedis 21.3%
- Nitrososphaeraceae 17.2%
- Bacillaceae 6.1%
- Pirellulaceae 5.2%
- Chitinophagaceae 3.0%
- Vicinamibacteraceae 2.5%
- Pedosphaeraceae 2.3%
- everything else 42.5%
- Incertae Sedis 56.8%
- Candidatus Nitrososphaera 3.0%
- Paenibacillus 2.0%
- Niallia 1.9%
- Pirellula 1.7%
- Peribacillus 1.7%
- Massilia 1.6%
- everything else 31.4%
- uncultured bacterium 49.7%
- uncultured archaeon 12.6%
- uncultured Acidobacteria bacterium 5.3%
- uncultured crenarchaeote 4.6%
- uncultured soil bacterium 1.9%
- Bacillus huizhouensis 1.7%
- Bacillus sp. (in: Bacteria) 1.6%
- everything else 22.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- shared: 0.1 m, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.