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SAMN38047004
Marchfeld_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
10,768
Reads
420
Observed features
5.634
Shannon
0.933
Evenness
420
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591420
Per-run QC
- 16S identity
- 97.7%
- Q30
- 94.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 186 (1.7%)
- ASV_4482 · Incertae Sedis 206 (1.9%)
- ASV_5593 · Incertae Sedis 187 (1.7%)
- ASV_6704 · Incertae Sedis 172 (1.6%)
- ASV_7815 · Incertae Sedis 167 (1.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 79.8%
- Archaea 20.2%
- Thermoproteota 20.2%
- Acidobacteriota 12.0%
- Actinomycetota 11.0%
- Bacillota 10.8%
- Pseudomonadota 10.7%
- Bacteroidota 9.2%
- Planctomycetota 7.3%
- everything else 18.8%
- Nitrososphaeria 20.2%
- Bacilli 10.5%
- Bacteroidia 9.2%
- Verrucomicrobiia 6.7%
- Planctomycetes 6.7%
- Gammaproteobacteria 6.0%
- Actinobacteria 5.7%
- everything else 35.0%
- Nitrososphaerales 20.2%
- Incertae Sedis 8.5%
- Bacillales 7.9%
- Vicinamibacterales 5.5%
- Pirellulales 4.5%
- Chitinophagales 4.1%
- Burkholderiales 3.6%
- everything else 45.7%
- Nitrososphaeraceae 20.2%
- Incertae Sedis 19.0%
- Bacillaceae 7.4%
- Pirellulaceae 4.5%
- Chitinophagaceae 3.9%
- Chthoniobacteraceae 2.6%
- Pedosphaeraceae 2.4%
- everything else 40.1%
- Incertae Sedis 56.3%
- Candidatus Nitrososphaera 3.5%
- Niallia 2.3%
- Peribacillus 2.2%
- Chthoniobacter 2.1%
- Paenibacillus 2.0%
- Sphingomonas 1.5%
- everything else 30.1%
- uncultured bacterium 50.2%
- uncultured archaeon 14.5%
- uncultured crenarchaeote 5.6%
- uncultured Acidobacteria bacterium 2.6%
- Bacillus huizhouensis 2.2%
- uncultured Bacteroidetes bacterium 1.8%
- uncultured soil bacterium 1.8%
- everything else 21.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 94% similar (genus)
- shared: 0.1 m, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.