opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38047003
Marchfeld_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2022
derived from this sample's metadata and per-run QC
7,340
Reads
290
Observed features
5.153
Shannon
0.909
Evenness
290
Chao1
Where and when
- Collected
- 2022-04
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26591425
Per-run QC
- 16S identity
- 97.2%
- Q30
- 94.9%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 67.0%
- Archaea 33.0%
- Thermoproteota 33.0%
- Acidobacteriota 14.8%
- Actinomycetota 10.2%
- Bacillota 8.8%
- Pseudomonadota 8.1%
- Planctomycetota 5.8%
- Myxococcota 4.9%
- everything else 14.4%
- Nitrososphaeria 33.0%
- Vicinamibacteria 8.8%
- Bacilli 8.6%
- Actinobacteria 6.8%
- Planctomycetes 5.7%
- Alphaproteobacteria 4.5%
- bacteriap25 4.1%
- everything else 28.5%
- Nitrososphaerales 33.0%
- Incertae Sedis 10.4%
- Vicinamibacterales 8.8%
- Bacillales 7.3%
- Pirellulales 4.0%
- Hyphomicrobiales 2.1%
- Chthoniobacterales 2.0%
- everything else 32.4%
- Nitrososphaeraceae 33.0%
- Incertae Sedis 20.3%
- Bacillaceae 7.3%
- Pirellulaceae 4.0%
- Vicinamibacteraceae 3.0%
- Nitrospiraceae 1.8%
- Chthoniobacteraceae 1.8%
- everything else 28.8%
- Incertae Sedis 60.4%
- Candidatus Nitrososphaera 7.7%
- Niallia 4.7%
- Pir4 lineage 2.3%
- Nitrospira 1.8%
- Bryobacter 1.4%
- Chthoniobacter 1.3%
- everything else 20.4%
- uncultured bacterium 40.5%
- uncultured archaeon 22.9%
- uncultured crenarchaeote 10.1%
- uncultured Acidobacteria bacterium 6.1%
- uncultured Bacillus sp. 4.0%
- uncultured soil bacterium 1.3%
- uncultured Verrucomicrobia bacterium 1.3%
- everything else 13.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 86% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 85% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 85% similar (genus)
- same collection date
- shared: 0.1 m, 2022
- composition 84% similar (genus)
- same collection date
- shared: 0.1 m, 2022
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.