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SAMN38049522
Marchfeld_HighP_Residues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
16,510
Reads
565
Observed features
5.904
Shannon
0.932
Evenness
565
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596455
Per-run QC
- 16S identity
- 95.5%
- Q30
- 88.3%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 363 (2.2%)
- ASV_4482 · Incertae Sedis 314 (1.9%)
- ASV_5593 · Incertae Sedis 241 (1.5%)
- ASV_6704 · Incertae Sedis 226 (1.4%)
- ASV_7815 · Incertae Sedis 192 (1.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 83.3%
- Archaea 16.7%
- Actinomycetota 18.5%
- Thermoproteota 16.6%
- Pseudomonadota 15.7%
- Acidobacteriota 11.6%
- Planctomycetota 8.7%
- Bacillota 7.5%
- Bacteroidota 6.0%
- everything else 15.3%
- Nitrososphaeria 16.6%
- Alphaproteobacteria 9.3%
- Actinobacteria 8.4%
- Planctomycetes 7.6%
- Bacilli 7.3%
- Thermoleophilia 7.3%
- Vicinamibacteria 6.8%
- everything else 36.6%
- Nitrososphaerales 16.6%
- Incertae Sedis 7.4%
- Vicinamibacterales 6.7%
- Bacillales 5.5%
- Pirellulales 4.6%
- Gaiellales 4.6%
- Hyphomicrobiales 4.5%
- everything else 50.1%
- Incertae Sedis 20.2%
- Nitrososphaeraceae 16.6%
- Bacillaceae 5.3%
- Pirellulaceae 4.6%
- Chitinophagaceae 3.7%
- Sphingomonadaceae 3.3%
- Gemmataceae 2.3%
- everything else 44.0%
- Incertae Sedis 55.7%
- Sphingomonas 2.8%
- Candidatus Nitrososphaera 2.2%
- Pirellula 2.1%
- Chthoniobacter 1.8%
- Paenibacillus 1.7%
- Peribacillus 1.7%
- everything else 32.1%
- uncultured bacterium 54.6%
- uncultured archaeon 12.5%
- uncultured crenarchaeote 4.2%
- uncultured Acidobacteria bacterium 3.9%
- Bacillus huizhouensis 1.7%
- Pseudarthrobacter polychromogenes 1.6%
- Bacillus sp. (in: Bacteria) 1.6%
- everything else 20.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- shared: 0.1 m, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.