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SAMN38049513
Wieselburg_HighP_Residues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
17,893
Reads
651
Observed features
6.142
Shannon
0.948
Evenness
651
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596449
Per-run QC
- 16S identity
- 88.5%
- Q30
- 87.8%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 95.6%
- Archaea 4.4%
- Pseudomonadota 19.5%
- Actinomycetota 15.6%
- Acidobacteriota 13.6%
- Verrucomicrobiota 9.2%
- Bacillota 8.0%
- Cyanobacteriota 7.2%
- Planctomycetota 6.6%
- everything else 20.3%
- Alphaproteobacteria 11.2%
- Actinobacteria 9.3%
- Verrucomicrobiia 9.2%
- Gammaproteobacteria 8.3%
- Acidobacteriae 7.9%
- Cyanobacteriia 7.2%
- Bacilli 6.9%
- everything else 40.0%
- Chthoniobacterales 7.2%
- Chloroplast 6.6%
- Burkholderiales 6.5%
- Hyphomicrobiales 5.8%
- Nitrososphaerales 4.4%
- Bacillales 4.0%
- Sphingomonadales 4.0%
- everything else 61.7%
- Incertae Sedis 21.9%
- Chthoniobacteraceae 7.0%
- Nitrososphaeraceae 4.4%
- Bacillaceae 4.0%
- Sphingomonadaceae 4.0%
- Chitinophagaceae 3.6%
- Xanthobacteraceae 2.9%
- everything else 52.3%
- Incertae Sedis 43.9%
- Candidatus Udaeobacter 5.9%
- Sphingomonas 4.0%
- Nocardioides 2.7%
- Paenibacillus 2.4%
- Candidatus Solibacter 2.1%
- Massilia 1.7%
- everything else 37.3%
- uncultured bacterium 59.8%
- uncultured Acidobacteria bacterium 4.3%
- uncultured archaeon 4.1%
- metagenome 3.8%
- uncultured eukaryote 2.0%
- Bacillus sp. (in: Bacteria) 1.6%
- uncultured Verrucomicrobia bacterium 1.0%
- everything else 23.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 2021, trimmed
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.