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SAMN38049510
Wieselburg_HighP_Residues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
18,703
Reads
644
Observed features
6.025
Shannon
0.932
Evenness
644
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596459
Per-run QC
- 16S identity
- 79.7%
- Q30
- 87.4%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 83.7%
- Archaea 16.3%
- Actinomycetota 20.5%
- Thermoproteota 16.3%
- Pseudomonadota 14.2%
- Planctomycetota 12.2%
- Acidobacteriota 7.6%
- Chloroflexota 6.6%
- Bacillota 5.6%
- everything else 17.0%
- Nitrososphaeria 16.3%
- Planctomycetes 11.0%
- Thermoleophilia 8.8%
- Actinobacteria 7.6%
- Gammaproteobacteria 7.3%
- Alphaproteobacteria 6.9%
- Bacilli 5.4%
- everything else 36.7%
- Nitrososphaerales 16.3%
- Incertae Sedis 9.8%
- Gaiellales 5.7%
- Pirellulales 5.7%
- Hyphomicrobiales 4.1%
- Vicinamibacterales 3.8%
- Bacillales 3.7%
- everything else 51.0%
- Incertae Sedis 22.2%
- Nitrososphaeraceae 16.3%
- Pirellulaceae 5.7%
- Gemmataceae 3.6%
- Bacillaceae 3.6%
- Chitinophagaceae 3.0%
- Chthoniobacteraceae 1.9%
- everything else 43.7%
- Incertae Sedis 57.6%
- Pirellula 3.0%
- Candidatus Nitrososphaera 2.3%
- Chthoniobacter 1.5%
- Sphingomonas 1.3%
- Nocardioides 1.3%
- Blastococcus 1.3%
- everything else 31.8%
- uncultured bacterium 56.9%
- uncultured archaeon 12.1%
- uncultured crenarchaeote 4.2%
- uncultured Acidobacteria bacterium 2.6%
- uncultured soil bacterium 1.7%
- Bacillus huizhouensis 1.1%
- Bacillus sp. (in: Bacteria) 1.1%
- everything else 20.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 90% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.