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SAMN38049523
Marchfeld_HighP_Residues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
19,990
Reads
691
Observed features
6.116
Shannon
0.935
Evenness
691
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596454
Per-run QC
- 16S identity
- 95.0%
- Q30
- 87.2%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 84.7%
- Archaea 15.3%
- Actinomycetota 18.9%
- Pseudomonadota 16.1%
- Thermoproteota 15.3%
- Acidobacteriota 11.5%
- Planctomycetota 8.9%
- Bacillota 6.5%
- Chloroflexota 5.7%
- everything else 17.0%
- Nitrososphaeria 15.3%
- Alphaproteobacteria 8.9%
- Actinobacteria 8.9%
- Planctomycetes 8.0%
- Gammaproteobacteria 7.1%
- Thermoleophilia 7.1%
- Vicinamibacteria 7.0%
- everything else 37.8%
- Nitrososphaerales 15.3%
- Incertae Sedis 9.2%
- Vicinamibacterales 6.9%
- Gaiellales 4.7%
- Bacillales 4.5%
- Hyphomicrobiales 4.4%
- Pirellulales 4.4%
- everything else 50.6%
- Incertae Sedis 22.8%
- Nitrososphaeraceae 15.3%
- Pirellulaceae 4.4%
- Bacillaceae 4.2%
- Chitinophagaceae 2.7%
- Sphingomonadaceae 2.7%
- Gemmataceae 2.6%
- everything else 45.3%
- Incertae Sedis 56.4%
- Candidatus Nitrososphaera 2.8%
- Sphingomonas 2.1%
- Pirellula 2.1%
- Mycobacterium 1.5%
- Peribacillus 1.5%
- Chthoniobacter 1.4%
- everything else 32.2%
- uncultured bacterium 53.5%
- uncultured archaeon 11.5%
- uncultured Acidobacteria bacterium 4.1%
- uncultured crenarchaeote 3.9%
- uncultured soil bacterium 1.9%
- Bacillus huizhouensis 1.5%
- metagenome 1.4%
- everything else 22.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 92% similar (genus)
- shared: 0.1 m, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.