opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38049524
Marchfeld_HighP_Residues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
20,403
Reads
679
Observed features
6.109
Shannon
0.937
Evenness
679
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596453
Per-run QC
- 16S identity
- 94.8%
- Q30
- 87.5%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 349 (1.7%)
- ASV_4482 · Incertae Sedis 306 (1.5%)
- ASV_5593 · Incertae Sedis 263 (1.3%)
- ASV_6704 · Incertae Sedis 260 (1.3%)
- ASV_7815 · Incertae Sedis 212 (1.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 86.0%
- Archaea 14.0%
- Actinomycetota 21.9%
- Pseudomonadota 15.9%
- Thermoproteota 14.0%
- Acidobacteriota 11.4%
- Planctomycetota 8.9%
- Bacillota 6.9%
- Chloroflexota 5.6%
- everything else 15.5%
- Nitrososphaeria 14.0%
- Actinobacteria 10.0%
- Alphaproteobacteria 9.2%
- Planctomycetes 8.0%
- Thermoleophilia 7.7%
- Vicinamibacteria 7.2%
- Gammaproteobacteria 6.7%
- everything else 37.2%
- Nitrososphaerales 14.0%
- Incertae Sedis 8.6%
- Vicinamibacterales 7.0%
- Gaiellales 5.2%
- Bacillales 4.6%
- Hyphomicrobiales 4.4%
- Pirellulales 4.4%
- everything else 51.8%
- Incertae Sedis 22.8%
- Nitrososphaeraceae 14.0%
- Pirellulaceae 4.4%
- Bacillaceae 4.2%
- Sphingomonadaceae 2.7%
- Chitinophagaceae 2.7%
- Gemmataceae 2.6%
- everything else 46.6%
- Incertae Sedis 54.1%
- Sphingomonas 2.7%
- Candidatus Nitrososphaera 2.3%
- Pirellula 2.0%
- Nocardioides 1.6%
- Chthoniobacter 1.5%
- Pseudarthrobacter 1.5%
- everything else 34.3%
- uncultured bacterium 58.7%
- uncultured archaeon 10.5%
- uncultured Acidobacteria bacterium 3.6%
- uncultured crenarchaeote 3.5%
- metagenome 1.7%
- uncultured soil bacterium 1.6%
- Pseudarthrobacter polychromogenes 1.5%
- everything else 19.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.